Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq25 143 6e-29 seq2 111 4e-19 >seq25 Length=4183617 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||| |||| ||||||||| | | ||| | ||||| Sbjct 2767948 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2767889 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || || |||||||||||||| || || || ||| Sbjct 2767888 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 2767829 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | ||| || | || ||| || ||||| ||||||||| Sbjct 2767828 TGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTC 2767769 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || Sbjct 2767768 TTTCCAGTCAGAGTCTTCACGAAGATCTG 2767740 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||||| || || | || || Sbjct 2767720 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767661 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||| |||||||||||||||||||| ||||| || || || ||| Sbjct 2767660 TCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767601 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 2767600 TGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTC 2767541 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 2767540 TTGCCGGTCAGGGTCTTGACGAAGATCTG 2767512 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||||| || || | || || Sbjct 2767492 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767433 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||||||||||||||| ||||| || || || ||| Sbjct 2767432 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767373 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||| || | | || || || | ||||| ||| Sbjct 2767372 TGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTC 2767313 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 2767312 TTGCCGGTGAGGGTCTTGACGAAGATCTG 2767284 >seq2 Length=2210479 Score = 111 bits (122), Expect = 4e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||||| || ||||| ||||| || |||||||| || || || | Sbjct 113965 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 113906 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||| |||||||| ||| || || ||||| ||||| ||| ||| | Sbjct 113905 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGT 113846 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| || |||||||| || || | Sbjct 113845 CGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGA 113786 Query 199620 A 199620 | Sbjct 113785 A 113785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921161956943