Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq25 141 1e-28 seq23 113 5e-20 seq2 89.7 6e-13 >seq25 Length=4183617 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | || |||||||| ||||| ||||||||||| |||||||| | || ||| Sbjct 2767945 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2767886 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||||||||| | || | || |||||| ||| Sbjct 2767885 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 2767826 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | || || |||||||| |||| ||||| || || Sbjct 2767825 ATCTTCGACTTCA-CGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTCTT 2767767 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 2767766 TCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| ||||||||||| || ||||| Sbjct 2767472 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 2767413 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 2767412 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTT 2767353 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||| || || || | |||||||| ||||| || || || || || Sbjct 2767352 ATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2767293 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 2767292 GAAGATCTGCAT 2767281 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| ||||||||||| || || || |||| || Sbjct 2767261 ACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCA 2767202 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || |||| |||||| ||||| | || | || |||||||||| | Sbjct 2767201 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 2767142 Query 46505 ATCTTCTTCTTGA 46517 |||||| ||||| Sbjct 2767141 ATCTTCGACTTGA 2767129 >seq23 Length=4176071 Score = 113 bits (124), Expect = 5e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || || ||||||||||| || || | Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||| ||||| | || | || |||||||||| ||||||| ||||| | Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || || || ||||| || | ||||| || |||||||| || || || || | Sbjct 893593 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 893652 Query 46584 AGATTTGCAT 46593 | || ||||| Sbjct 893653 AAATCTGCAT 893662 >seq2 Length=2210479 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || ||||| || | || || ||||||||||| || || | Sbjct 113965 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 113906 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||| ||||| | || | || |||||||||| |||||| ||||| ||| | Sbjct 113905 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGA-CGTTG 113847 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || ||||| || | ||||| || || || || || || || || Sbjct 113846 TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACG 113787 Query 46583 AAG 46585 ||| Sbjct 113786 AAG 113784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238195101080