Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq25 141 1e-28
seq23 113 5e-20
seq2 89.7 6e-13
>seq25
Length=4183617
Score = 141 bits (156), Expect = 1e-28
Identities = 159/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | || |||||||| ||||| ||||||||||| |||||||| | || |||
Sbjct 2767945 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2767886
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| |||| |||||||||||| | || | || |||||| |||
Sbjct 2767885 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 2767826
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||| | ||| | | | || || |||||||| |||| ||||| || ||
Sbjct 2767825 ATCTTCGACTTCA-CGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTCTT 2767767
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| || || || ||||| |||||
Sbjct 2767766 TCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct 2767472 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 2767413
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | || |||||||||| |||||| ||| | |
Sbjct 2767412 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTT 2767353
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || ||| || || || | |||||||| ||||| || || || || ||
Sbjct 2767352 ATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2767293
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 2767292 GAAGATCTGCAT 2767281
Score = 105 bits (116), Expect = 8e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||| ||||| ||||||||||| || || || |||| ||
Sbjct 2767261 ACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCA 2767202
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| || || |||| |||||| ||||| | || | || |||||||||| |
Sbjct 2767201 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 2767142
Query 46505 ATCTTCTTCTTGA 46517
|||||| |||||
Sbjct 2767141 ATCTTCGACTTGA 2767129
>seq23
Length=4176071
Score = 113 bits (124), Expect = 5e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| | || || ||||||||||| || || |
Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||| ||||| | || | || |||||||||| ||||||| ||||| |
Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | || || || ||||| || | ||||| || |||||||| || || || || |
Sbjct 893593 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 893652
Query 46584 AGATTTGCAT 46593
| || |||||
Sbjct 893653 AAATCTGCAT 893662
>seq2
Length=2210479
Score = 89.7 bits (98), Expect = 6e-13
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| |||||||| || ||||| || | || || ||||||||||| || || |
Sbjct 113965 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 113906
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
| | ||||| ||||| | || | || |||||||||| |||||| ||||| ||| |
Sbjct 113905 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGA-CGTTG 113847
Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| || ||||| || | ||||| || || || || || || || ||
Sbjct 113846 TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACG 113787
Query 46583 AAG 46585
|||
Sbjct 113786 AAG 113784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238195101080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |