Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq9 340 2e-88
seq25 114 1e-20
seq23 104 2e-17
seq2 91.5 1e-13
>seq9
Length=477563
Score = 340 bits (376), Expect = 2e-88
Identities = 607/867 (70%), Gaps = 33/867 (4%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || ||||| || |||||||| || || || || || |
Sbjct 51390 CATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCC 51449
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707
|| || ||| | ||| || || |||||||||| | |||||| |||| ||||
Sbjct 51450 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCC 51509
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTC 132764
|| || | || ||||| | |||||| |||||||||||||| ||| ||| ||| |
Sbjct 51510 GAG-AG--CCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGC 51566
Query 132765 GCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGG 132823
| || | |||||||| |||| ||||| || ||||||| || ||||| ||||
Sbjct 51567 G---TTCATGCCCAGCAGGGCGCAG-GGCAGAGCCTCGGTGATGAACTCCTGCTCAATGG 51622
Query 132824 CGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCT 132883
| || || ||||||| |||| | | | || ||| || || ||| | ||
Sbjct 51623 CCACGGCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGG 51682
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
||| | || ||| || |||||| |||| |||||||| | || || || ||||||
Sbjct 51683 AGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGG 51742
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
||| |||| ||||||||| | |||||| || |||| ||| || || || ||| | ||
Sbjct 51743 AGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGATCCAGAAGAT--CGACGAGAAGGC 51800
Query 133004 -CCGAA-AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061
||| ||||||| |||||||||||| || || || |||||||||| |||| | | |
Sbjct 51801 ACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGA 51860
Query 133062 TTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119
|| ||| ||| |||||||| | ||||| |||||||| | || ||| || ||
Sbjct 51861 CTCCTTGTCCTGA--ATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATG 51918
Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCG 133176
|| || |||||||| || | | || | | || | |||| | | |||||||||
Sbjct 51919 GTGTCAATGGCGTTGAAGAG--GAAGGTGCGCTGC-GAGGGCTCCTTGATGTAGGTGTCA 51975
Query 133177 ATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAG 133236
||||| ||| || | || ||||| | ||||||||| ||| || |||||||| |||
Sbjct 51976 ATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 52035
Query 133237 CACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGAC 133295
|| || ||||| ||||||||| || | || ||||||||||||||| || ||||||||
Sbjct 52036 CAGCGGGCCTCAGGCACCTGCACCTCG-GCGCTGAAACGCTCGACCAGGTTCTCGTTGAC 52094
Query 133296 GATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTC 133355
|||||||| |||||||| ||||| || | |||| |||||| ||||||| ||
Sbjct 52095 AATGCCGTCAGACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATC 52154
Query 133356 GTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412
| | | ||| | |||||| | | |||||||||||||| | ||||||| | |||||
Sbjct 52155 GGTTAGGCGGTTGTTCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCA 52214
Query 133413 AAACGACGCCTCGGCTTTTTTGTACAT 133439
||||| ||||| || || ||||||||
Sbjct 52215 GAACGAGGCCTCAGCCTTCTTGTACAT 52241
>seq25
Length=4183617
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | |
Sbjct 2767281 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGTCG 2767340
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | ||||| ||||| || ||| | || ||
Sbjct 2767341 GATACCATCGATAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 2767399
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || ||||| || |||| |||||||| ||||||||
Sbjct 2767400 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAA 2767459
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| ||||| | || || || |||||||| |||
Sbjct 2767460 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGT 2767496
Score = 113 bits (124), Expect = 5e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| |||||||| | || |||||| | |
Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | ||||| ||||| || ||| | || ||
Sbjct 2767569 GATACCATCGATAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 2767627
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || |||||||| |||| |||||||| ||||||||
Sbjct 2767628 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAA 2767687
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || |||||||| ||
Sbjct 2767688 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCG 2767723
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| || || ||||||||| |||| |||||| | | || | | | | | ||
Sbjct 2767075 TCACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACTATCGACAATGTCAAGT 2767134
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| || || | ||||||||||| || || | || ||||
Sbjct 2767135 CGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGCGCCTGATCTTTGCTGGCA 2767194
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| || |||||| ||||||||||||||| ||||| | || || |
Sbjct 2767195 AGCAGCTTGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCC 2767254
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| | | |||||
Sbjct 2767255 ATCTCGTCCTCCGTCTCCGCGGCGG 2767279
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || || |||||| | || || || | |
Sbjct 2767737 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACGATCACCTTGGAAGTGGAATCATCG 2767796
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | || || ||||| || ||| | |||||
Sbjct 2767797 GATACCATTGACAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCA 2767855
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| ||||| ||||| || || | ||||| || |||||||||
Sbjct 2767856 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAA 2767915
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| ||| || || || |||| || || || | || ||||
Sbjct 2767916 CATCCAGAAGGAGAGC-ACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCC 2767965
>seq23
Length=4176071
Score = 104 bits (114), Expect = 2e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| || |||||| | || || ||| || |
Sbjct 893662 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 893603
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | || || |||| ||||| ||||| |||||| | ||||||
Sbjct 893602 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 893543
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| ||||| || || | |||||||| ||||||||||
Sbjct 893542 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 893483
Query 38424 ATCCAAAAGG 38433
||||| ||||
Sbjct 893482 ATCCAGAAGG 893473
>seq2
Length=2210479
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/182 (72%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||| || || || |||||| | || || ||| | | |||| | |
Sbjct 113785 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 113844
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||||||||| ||
Sbjct 113845 GACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 113903
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|||| || ||||| ||||| || || | || || || |||||||||||||| ||
Sbjct 113904 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963
Query 38432 GG 38433
||
Sbjct 113964 GG 113965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172618687360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |