Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9 340 2e-88 seq25 114 1e-20 seq23 104 2e-17 seq2 91.5 1e-13 >seq9 Length=477563 Score = 340 bits (376), Expect = 2e-88 Identities = 607/867 (70%), Gaps = 33/867 (4%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || |||||||| || || || || || | Sbjct 51390 CATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCC 51449 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 || || ||| | ||| || || |||||||||| | |||||| |||| |||| Sbjct 51450 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCC 51509 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTC 132764 || || | || ||||| | |||||| |||||||||||||| ||| ||| ||| | Sbjct 51510 GAG-AG--CCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGC 51566 Query 132765 GCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGG 132823 | || | |||||||| |||| ||||| || ||||||| || ||||| |||| Sbjct 51567 G---TTCATGCCCAGCAGGGCGCAG-GGCAGAGCCTCGGTGATGAACTCCTGCTCAATGG 51622 Query 132824 CGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCT 132883 | || || ||||||| |||| | | | || ||| || || ||| | || Sbjct 51623 CCACGGCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGG 51682 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||| | || ||| || |||||| |||| |||||||| | || || || |||||| Sbjct 51683 AGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGG 51742 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| |||| ||||||||| | |||||| || |||| ||| || || || ||| | || Sbjct 51743 AGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGATCCAGAAGAT--CGACGAGAAGGC 51800 Query 133004 -CCGAA-AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 ||| ||||||| |||||||||||| || || || |||||||||| |||| | | | Sbjct 51801 ACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGA 51860 Query 133062 TTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 || ||| ||| |||||||| | ||||| |||||||| | || ||| || || Sbjct 51861 CTCCTTGTCCTGA--ATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATG 51918 Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCG 133176 || || |||||||| || | | || | | || | |||| | | ||||||||| Sbjct 51919 GTGTCAATGGCGTTGAAGAG--GAAGGTGCGCTGC-GAGGGCTCCTTGATGTAGGTGTCA 51975 Query 133177 ATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAG 133236 ||||| ||| || | || ||||| | ||||||||| ||| || |||||||| ||| Sbjct 51976 ATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 52035 Query 133237 CACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGAC 133295 || || ||||| ||||||||| || | || ||||||||||||||| || |||||||| Sbjct 52036 CAGCGGGCCTCAGGCACCTGCACCTCG-GCGCTGAAACGCTCGACCAGGTTCTCGTTGAC 52094 Query 133296 GATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTC 133355 |||||||| |||||||| ||||| || | |||| |||||| ||||||| || Sbjct 52095 AATGCCGTCAGACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATC 52154 Query 133356 GTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | | | ||| | |||||| | | |||||||||||||| | ||||||| | ||||| Sbjct 52155 GGTTAGGCGGTTGTTCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCA 52214 Query 133413 AAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||| ||||| || || |||||||| Sbjct 52215 GAACGAGGCCTCAGCCTTCTTGTACAT 52241 >seq25 Length=4183617 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | | Sbjct 2767281 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGTCG 2767340 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| || ||| | || || Sbjct 2767341 GATACCATCGATAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 2767399 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| |||||||| |||||||| Sbjct 2767400 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAA 2767459 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || |||||||| ||| Sbjct 2767460 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGT 2767496 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || |||||| | | Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| || ||| | || || Sbjct 2767569 GATACCATCGATAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 2767627 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || |||||||| |||| |||||||| |||||||| Sbjct 2767628 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAA 2767687 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||||||| || Sbjct 2767688 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCG 2767723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| || || ||||||||| |||| |||||| | | || | | | | | || Sbjct 2767075 TCACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACTATCGACAATGTCAAGT 2767134 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| || || | ||||||||||| || || | || |||| Sbjct 2767135 CGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGCGCCTGATCTTTGCTGGCA 2767194 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| || |||||| ||||||||||||||| ||||| | || || | Sbjct 2767195 AGCAGCTTGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCC 2767254 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| | | ||||| Sbjct 2767255 ATCTCGTCCTCCGTCTCCGCGGCGG 2767279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || |||||| | || || || | | Sbjct 2767737 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACGATCACCTTGGAAGTGGAATCATCG 2767796 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | || || ||||| || ||| | ||||| Sbjct 2767797 GATACCATTGACAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCA 2767855 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || || | ||||| || ||||||||| Sbjct 2767856 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAA 2767915 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| ||| || || || |||| || || || | || |||| Sbjct 2767916 CATCCAGAAGGAGAGC-ACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCC 2767965 >seq23 Length=4176071 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || |||||| | || || ||| || | Sbjct 893662 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 893603 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || || |||| ||||| ||||| |||||| | |||||| Sbjct 893602 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 893543 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | |||||||| |||||||||| Sbjct 893542 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 893483 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 893482 ATCCAGAAGG 893473 >seq2 Length=2210479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||| || || || |||||| | || || ||| | | |||| | | Sbjct 113785 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 113844 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 113845 GACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 113903 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 |||| || ||||| ||||| || || | || || || |||||||||||||| || Sbjct 113904 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963 Query 38432 GG 38433 || Sbjct 113964 GG 113965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172618687360