Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq7 360 2e-94
seq23 154 2e-32
seq25 105 8e-18
seq27 89.7 7e-13
>seq7
Length=520767
Score = 360 bits (398), Expect = 2e-94
Identities = 586/841 (70%), Gaps = 2/841 (0%)
Strand=Plus/Plus
Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080
|||||| || ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 397613 GATGGCAGCCTGGACAGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGCTCTTGTT 397672
Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140
| || || ||||| || | ||| | || | || || || ||||| || || ||
Sbjct 397673 GGGCTCCTTGCCGTTGAAGTGATCGCTGATCAGCTTCTGGATCTTGGGGATACGGGTGGA 397732
Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200
|||||| || | ||||| || | ||| | || || |||||||| | || ||
Sbjct 397733 TCCACCAACGAGCACGATCTCGTGCACCTGGGACTTGTCGATCTTGGCATCGGTCAGGAC 397792
Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260
||||| || | || ||||| | ||| || || ||||| ||||| ||
Sbjct 397793 ACGGTCGACGGGCTGGATGGTCGAGCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGC 397852
Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320
|| ||||| || |||||||| |||| || || || | ||||||||| || || | ||
Sbjct 397853 GCGAGTAATCGAAGTATAGAAGTCAATACCCTCATACAGCGAATCAATCTCGATCGAGGT 397912
Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380
|| || | ||| || | || ||||| || ||||| || || || || | ||| || ||
Sbjct 397913 CTGAGCGGACGACGAAAGGGTACGCTTGGCACGCTCGCAAGCAGTGCGGAGACGGCGGAG 397972
Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGT 7439
||||| | ||| ||| | || ||||| || || || || ||||| |||| |||||
Sbjct 397973 AGCACGAGCGTTCGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCATTCAC-GAAGT 398031
Query 7440 GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTT 7499
| | | || | ||||||||| |||||||||| || || || || ||||||| |
Sbjct 398032 GCTGGACCAGGCGGTGATCGAAATCCTCACCACCCAGATGGGTGTCACCAGCGGTCGACT 398091
Query 7500 TGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559
|||| || |||||||| | |||||| | | | ||| ||||| || |||||||| || |
Sbjct 398092 TGACCTCGAAGATACCGTCCTCAATGGTAAGGAGCGACACATCGAAAGTACCACCGCCAA 398151
Query 7560 GGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAG 7619
| || || ||||| ||||| ||| | || |||||||||||||| || || || |
Sbjct 398152 GATCGAAGATGAGAACGTTGCGCTCGCCCTCGACCTTCTTATCGAGACCATAGGCAATGG 398211
Query 7620 CCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679
| || || || || || ||||| ||||| ||| ||||||||| ||||| | ||||
Sbjct 398212 CGGCAGCGGTAGGCTCGTTAATGATACGGAGAACGTTCAGGCCGGCAATGAGACCAGCAT 398271
Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739
| || || || || || || || ||||| |||||||| || || || ||||| |||| |
Sbjct 398272 CCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGCACGGTAACGACGGCGTTGG 398331
Query 7740 TGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATG 7799
|||| | | ||||| ||||| || ||| | || ||| ||||| || ||||| || |
Sbjct 398332 TGACGGTGGTTCCGAGGTACGACTCGGCGGTCTCACGCATCTTGGTCAGGACCATAGACG 398391
Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859
| ||||| |||| | |||||| || || || || || || ||||| ||||| ||||| |
Sbjct 398392 AGATCTCCTCAGGGGTAAACTGCTTGGTCTCGCCCTTGAACTCAACCTCAATGATGGGCT 398451
Query 7860 T 7860
|
Sbjct 398452 T 398452
>seq23
Length=4176071
Score = 154 bits (170), Expect = 2e-32
Identities = 350/521 (67%), Gaps = 19/521 (4%)
Strand=Plus/Minus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT--GGATGTATAGAAATCAACGCCGTCGTATAAC 7300
||| ||||| ||||| |||||||| || ||| | ||| || | || ||| | |
Sbjct 2216445 CAGCTCCTCGAAACGAGCACGGGTGATCTGGACGGT--GAAGTCCTCACCATCGAAGAGA 2216388
Query 7301 GAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358
|| ||||| |||||||| || || || || | || || || ||||| |||||||| |
Sbjct 2216387 GAGTCAATCTCAATGGTGGTCTGGGCACCGCTG--GACAAAGTACGCTTGGCGCGCTCGC 2216330
Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418
| || || || | |||||||||||||||||||| ||| || | || ||||| || |
Sbjct 2216329 AAGCGGTACGGAGACGACGAAGGGCACGCGGGTCACCCGACAGGTCCTTCTTGGTCTTGC 2216270
Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478
| | || || | | ||| || || | | |||||||| | |||||| | |
Sbjct 2216269 GCTGGAAGTCCTTCTTGCAGTAATCCAGCAGGTTGGTGTCGAAATCCTGACCACCAAGAT 2216210
Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538
| ||||| || || || || ||||| || | ||| || | ||||| | || || |
Sbjct 2216209 GGGTATCACCAGCAGTGGCCTTGACGGTGAACACACCGCCCTGGATGTTCAGCAGGGACA 2216150
Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTC 7597
|||| || ||||||||||| || || | ||||| ||||| || || | | | |
Sbjct 2216149 CATCGAAGGTACCACCACCAAGATCGTAGATGAGCACGTTGCG----CTCCTTTCCGGAC 2216094
Query 7598 TTATCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651
|| || |||||||| || || || || || || || || || || ||||| ||
Sbjct 2216093 TTTCCGGAGCCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGG 2216034
Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711
|||||||||||| || | | ||||| || || || || || || ||||| |||
Sbjct 2216033 ACGTTCAGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAG 2215974
Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
||||| || || || | ||| || | | ||| ||||| ||
Sbjct 2215973 TAGGCGGGCACGGTGATGACAGCCTTCTCGACCTTCTTGCC 2215933
>seq25
Length=4183617
Score = 105 bits (116), Expect = 8e-18
Identities = 239/358 (67%), Gaps = 6/358 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | || ||||| || || || || || || || | |||
Sbjct 2870580 TCGAAATCCTCACCACCAAGATGGGTATCACCGGCAGTGGCCAGAACCTCGAACACACCC 2870639
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573
|| || | || || ||||| || ||||||||||| || || | |||||
Sbjct 2870640 TGGTCGATCGACAGCAGGGACACATCGAAGGTACCACCACCGAGATCGTAGACAATGATC 2870699
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
| | | | || || ||| || |||||||| || || || || || || ||
Sbjct 2870700 TGGCGCTCACCCTCCTCAAG---CTTGTCAAGACCGTAGGCAATGGCAGCGGCGGTGGGC 2870756
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
|| || | ||| || || ||| || || ||||| | | |||||||| || || ||
Sbjct 2870757 TCGTTGACAATGCGGAGGACGTTGAGACCGGCAATGATACCGGCATCTTTGGTAGCCTGG 2870816
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753
|| || ||||| |||||||||||||| || || || |||| ||||| ||||| ||
Sbjct 2870817 CGCTGGTTGTCGTTGAAGTAGGCCGGGACGGTGACAACGGCGTGGGTGACCTTCTTGCCA 2870876
Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811
|| || | || |||| || ||||| ||| |||| ||| | || ||||| ||||
Sbjct 2870877 AGGTAGGCCTCAGCGACGTCCTTCATCTTGCCCAGAATCATGGCGGAGATCTCCTCAG 2870934
>seq27
Length=2670746
Score = 89.7 bits (98), Expect = 7e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656
||| || |||||||| || | || || || || || || || | || ||| ||| ||
Sbjct 1988791 CTTCTCAAGACCGTAGGCCAGGGCAGCGGCAGTGGGCTCGTTGACAACACGCAGAACATT 1988850
Query 7657 CAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715
||||| ||||| | ||| ||||| || || || || || ||||||||||| |||||||
Sbjct 1988851 AAGGCCGGCAATT-TGGCCAGCATCCTTGGTGGCCTGACGCTGCGAATCGTTGAAGTAGG 1988909
Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775
| || || || ||||| |||| | |||| ||| ||||| | || ||| | || |
Sbjct 1988910 CAGGAACGGTGACGACGGCGTTCTTGACGGGCTTGGACAGATAGGCCTCGGCGGTCTCCT 1988969
Query 7776 TCATTTTGGTAAGAAC 7791
|||| ||| | || ||
Sbjct 1988970 TCATCTTGTTCAGGAC 1988985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132569764360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |