Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7 360 2e-94 seq23 154 2e-32 seq25 105 8e-18 seq27 89.7 7e-13 >seq7 Length=520767 Score = 360 bits (398), Expect = 2e-94 Identities = 586/841 (70%), Gaps = 2/841 (0%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 |||||| || ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 397613 GATGGCAGCCTGGACAGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGCTCTTGTT 397672 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 | || || ||||| || | ||| | || | || || || ||||| || || || Sbjct 397673 GGGCTCCTTGCCGTTGAAGTGATCGCTGATCAGCTTCTGGATCTTGGGGATACGGGTGGA 397732 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 |||||| || | ||||| || | ||| | || || |||||||| | || || Sbjct 397733 TCCACCAACGAGCACGATCTCGTGCACCTGGGACTTGTCGATCTTGGCATCGGTCAGGAC 397792 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 ||||| || | || ||||| | ||| || || ||||| ||||| || Sbjct 397793 ACGGTCGACGGGCTGGATGGTCGAGCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGC 397852 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 || ||||| || |||||||| |||| || || || | ||||||||| || || | || Sbjct 397853 GCGAGTAATCGAAGTATAGAAGTCAATACCCTCATACAGCGAATCAATCTCGATCGAGGT 397912 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || || | ||| || | || ||||| || ||||| || || || || | ||| || || Sbjct 397913 CTGAGCGGACGACGAAAGGGTACGCTTGGCACGCTCGCAAGCAGTGCGGAGACGGCGGAG 397972 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGT 7439 ||||| | ||| ||| | || ||||| || || || || ||||| |||| ||||| Sbjct 397973 AGCACGAGCGTTCGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCATTCAC-GAAGT 398031 Query 7440 GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTT 7499 | | | || | ||||||||| |||||||||| || || || || ||||||| | Sbjct 398032 GCTGGACCAGGCGGTGATCGAAATCCTCACCACCCAGATGGGTGTCACCAGCGGTCGACT 398091 Query 7500 TGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559 |||| || |||||||| | |||||| | | | ||| ||||| || |||||||| || | Sbjct 398092 TGACCTCGAAGATACCGTCCTCAATGGTAAGGAGCGACACATCGAAAGTACCACCGCCAA 398151 Query 7560 GGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAG 7619 | || || ||||| ||||| ||| | || |||||||||||||| || || || | Sbjct 398152 GATCGAAGATGAGAACGTTGCGCTCGCCCTCGACCTTCTTATCGAGACCATAGGCAATGG 398211 Query 7620 CCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679 | || || || || || ||||| ||||| ||| ||||||||| ||||| | |||| Sbjct 398212 CGGCAGCGGTAGGCTCGTTAATGATACGGAGAACGTTCAGGCCGGCAATGAGACCAGCAT 398271 Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739 | || || || || || || || ||||| |||||||| || || || ||||| |||| | Sbjct 398272 CCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGCACGGTAACGACGGCGTTGG 398331 Query 7740 TGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATG 7799 |||| | | ||||| ||||| || ||| | || ||| ||||| || ||||| || | Sbjct 398332 TGACGGTGGTTCCGAGGTACGACTCGGCGGTCTCACGCATCTTGGTCAGGACCATAGACG 398391 Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859 | ||||| |||| | |||||| || || || || || || ||||| ||||| ||||| | Sbjct 398392 AGATCTCCTCAGGGGTAAACTGCTTGGTCTCGCCCTTGAACTCAACCTCAATGATGGGCT 398451 Query 7860 T 7860 | Sbjct 398452 T 398452 >seq23 Length=4176071 Score = 154 bits (170), Expect = 2e-32 Identities = 350/521 (67%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT--GGATGTATAGAAATCAACGCCGTCGTATAAC 7300 ||| ||||| ||||| |||||||| || ||| | ||| || | || ||| | | Sbjct 2216445 CAGCTCCTCGAAACGAGCACGGGTGATCTGGACGGT--GAAGTCCTCACCATCGAAGAGA 2216388 Query 7301 GAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 || ||||| |||||||| || || || || | || || || ||||| |||||||| | Sbjct 2216387 GAGTCAATCTCAATGGTGGTCTGGGCACCGCTG--GACAAAGTACGCTTGGCGCGCTCGC 2216330 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 | || || || | |||||||||||||||||||| ||| || | || ||||| || | Sbjct 2216329 AAGCGGTACGGAGACGACGAAGGGCACGCGGGTCACCCGACAGGTCCTTCTTGGTCTTGC 2216270 Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 | | || || | | ||| || || | | |||||||| | |||||| | | Sbjct 2216269 GCTGGAAGTCCTTCTTGCAGTAATCCAGCAGGTTGGTGTCGAAATCCTGACCACCAAGAT 2216210 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538 | ||||| || || || || ||||| || | ||| || | ||||| | || || | Sbjct 2216209 GGGTATCACCAGCAGTGGCCTTGACGGTGAACACACCGCCCTGGATGTTCAGCAGGGACA 2216150 Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTC 7597 |||| || ||||||||||| || || | ||||| ||||| || || | | | | Sbjct 2216149 CATCGAAGGTACCACCACCAAGATCGTAGATGAGCACGTTGCG----CTCCTTTCCGGAC 2216094 Query 7598 TTATCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 || || |||||||| || || || || || || || || || || ||||| || Sbjct 2216093 TTTCCGGAGCCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGG 2216034 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 |||||||||||| || | | ||||| || || || || || || ||||| ||| Sbjct 2216033 ACGTTCAGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAG 2215974 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| || || || | ||| || | | ||| ||||| || Sbjct 2215973 TAGGCGGGCACGGTGATGACAGCCTTCTCGACCTTCTTGCC 2215933 >seq25 Length=4183617 Score = 105 bits (116), Expect = 8e-18 Identities = 239/358 (67%), Gaps = 6/358 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | || ||||| || || || || || || || | ||| Sbjct 2870580 TCGAAATCCTCACCACCAAGATGGGTATCACCGGCAGTGGCCAGAACCTCGAACACACCC 2870639 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573 || || | || || ||||| || ||||||||||| || || | ||||| Sbjct 2870640 TGGTCGATCGACAGCAGGGACACATCGAAGGTACCACCACCGAGATCGTAGACAATGATC 2870699 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | | | || || ||| || |||||||| || || || || || || || Sbjct 2870700 TGGCGCTCACCCTCCTCAAG---CTTGTCAAGACCGTAGGCAATGGCAGCGGCGGTGGGC 2870756 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||| || || ||| || || ||||| | | |||||||| || || || Sbjct 2870757 TCGTTGACAATGCGGAGGACGTTGAGACCGGCAATGATACCGGCATCTTTGGTAGCCTGG 2870816 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||||||||| || || || |||| ||||| ||||| || Sbjct 2870817 CGCTGGTTGTCGTTGAAGTAGGCCGGGACGGTGACAACGGCGTGGGTGACCTTCTTGCCA 2870876 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || || | || |||| || ||||| ||| |||| ||| | || ||||| |||| Sbjct 2870877 AGGTAGGCCTCAGCGACGTCCTTCATCTTGCCCAGAATCATGGCGGAGATCTCCTCAG 2870934 >seq27 Length=2670746 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || |||||||| || | || || || || || || || | || ||| ||| || Sbjct 1988791 CTTCTCAAGACCGTAGGCCAGGGCAGCGGCAGTGGGCTCGTTGACAACACGCAGAACATT 1988850 Query 7657 CAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 ||||| ||||| | ||| ||||| || || || || || ||||||||||| ||||||| Sbjct 1988851 AAGGCCGGCAATT-TGGCCAGCATCCTTGGTGGCCTGACGCTGCGAATCGTTGAAGTAGG 1988909 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 | || || || ||||| |||| | |||| ||| ||||| | || ||| | || | Sbjct 1988910 CAGGAACGGTGACGACGGCGTTCTTGACGGGCTTGGACAGATAGGCCTCGGCGGTCTCCT 1988969 Query 7776 TCATTTTGGTAAGAAC 7791 |||| ||| | || || Sbjct 1988970 TCATCTTGTTCAGGAC 1988985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132569764360