Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2 255 7e-63
seq9 91.5 2e-13
>seq2
Length=2210479
Score = 255 bits (282), Expect = 7e-63
Identities = 904/1396 (65%), Gaps = 35/1396 (3%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667
||| ||| ||||| ||||||| || || | || ||| |||||| || | | ||
Sbjct 1077018 CCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATC--TGGGGA-GACAACGTCGAGCG 1077074
Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727
||| | ||||| ||| || ||||||| | | |||| ||| || | || |||||
Sbjct 1077075 TGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCT 1077134
Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787
||||||||||||||| || |||| | || || ||||| ||| | |||||
Sbjct 1077135 CTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGACATGAAGGA 1077194
Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847
|| || | || || || | ||| |||| || ||| ||||| ||| |||
Sbjct 1077195 TGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGC 1077254
Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907
|||||| || || | | |||| | || | || | | ||| |||| || ||
Sbjct 1077255 TGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTCTTATATTGCCGGAAC 1077314
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
||||| || ||||||| || || ||||||||||| || ||| ||| || |||||
Sbjct 1077315 CAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGCTA 1077374
Query 111968 TGTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020
||| |||| ||||| | |||| || | | || |||| || ||||| |
Sbjct 1077375 TGTTGACCA----GGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCCGT 1077430
Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080
||||||| || | | |||||| | || |||| || || || | ||||||| |
Sbjct 1077431 GGCACGCCGACGTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGTCC 1077490
Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
| | | ||| | ||| ||||| ||||| || ||||||||||||||| |||| |||
Sbjct 1077491 GCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGAGA 1077550
Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200
||| | | | ||| |||| | || || || || |||||||| |||| | |
Sbjct 1077551 AGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACG 1077610
Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GAC 112258
| |||||||| || ||||| ||| |||||||||| || ||| ||| || |||
Sbjct 1077611 GCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTC--GCGGTCGCAAGAC 1077668
Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317
| | || | || | ||||| | || || ||| || |||| |||||||| || | |
Sbjct 1077669 CAT-CAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAACC 1077727
Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377
| | ||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| |
Sbjct 1077728 CCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCA 1077787
Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437
| || |||||||| || ||||| ||| | || | | |||||| |||||
Sbjct 1077788 TTCGCAGCTCCAACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTG 1077847
Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATT 112495
|||| ||||| || || ||||||| ||| || || || | | | |||| | | |
Sbjct 1077848 TGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTACGTTGA-CTACA-ACAAGGGCGTGTA 1077905
Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555
||| | ||| || || ||||| || || | || ||||| ||| | | ||
Sbjct 1077906 TGACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCGCATCAT 1077965
Query 112556 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612
|||| || |||||||| ||| ||||| || || ||| | ||||| ||
Sbjct 1077966 TGATGTCAACCACTACCCCGTGCCCGAG---GCTCGCAACAGCAACATGCGCCACCGCCC 1078022
Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTG 112671
|| ||| | ||||| || ||||| || |||| ||| | || || ||| | ||||
Sbjct 1078023 CATCGGTGTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTCGCTCTG-CGCATGCCCTTTG 1078081
Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731
| |||| ||| || ||| | || || || || ||||| || || ||||| ||||
Sbjct 1078082 AGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCACGCTGCTC 1078141
Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791
| ||| |||| | || ||| || || | || |||| |||||| ||||
Sbjct 1078142 TGTCGGCCTCGGTGGAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATGAGGGCTCTC 1078201
Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 112851
| | || || || | || || ||||| |||||| | | || ||| | || |
Sbjct 1078202 CCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCGACCTCTGGG 1078261
Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911
||||||| || ||||| | |||||| | ||| |||| |||||||| || |||
Sbjct 1078262 ACTGGGATAGCCTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACAGTCTGCTGCTGG 1078321
Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971
| || ||||| || ||| ||| | || || | || || || || |||||||| || |
Sbjct 1078322 CTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGCCGT 1078381
Query 112972 ACACGACGAACATCTA 112987
|||| | || |||||
Sbjct 1078382 ACACCTCCAATATCTA 1078397
>seq9
Length=477563
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 102181 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 102240
|||| || | || ||||| || ||||| ||||||||| ||| |||||| | |
Sbjct 51847 AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGA 51788
Query 102241 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 102300
| | ||| |||||||||| || | ||||| || || ||||||||||||||| ||||
Sbjct 51787 TCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCT 51728
Query 102301 CTCGTGACGAGGGACTCCAC 102320
| ||||||||||| || |||
Sbjct 51727 CGCGTGACGAGGGTCTGCAC 51708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742174980880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |