Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 255 7e-63 seq9 91.5 2e-13 >seq2 Length=2210479 Score = 255 bits (282), Expect = 7e-63 Identities = 904/1396 (65%), Gaps = 35/1396 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667 ||| ||| ||||| ||||||| || || | || ||| |||||| || | | || Sbjct 1077018 CCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATC--TGGGGA-GACAACGTCGAGCG 1077074 Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727 ||| | ||||| ||| || ||||||| | | |||| ||| || | || ||||| Sbjct 1077075 TGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCT 1077134 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 ||||||||||||||| || |||| | || || ||||| ||| | ||||| Sbjct 1077135 CTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGACATGAAGGA 1077194 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || || | || || || | ||| |||| || ||| ||||| ||| ||| Sbjct 1077195 TGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGC 1077254 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 |||||| || || | | |||| | || | || | | ||| |||| || || Sbjct 1077255 TGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTCTTATATTGCCGGAAC 1077314 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||||| || ||||||| || || ||||||||||| || ||| ||| || ||||| Sbjct 1077315 CAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGCTA 1077374 Query 111968 TGTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020 ||| |||| ||||| | |||| || | | || |||| || ||||| | Sbjct 1077375 TGTTGACCA----GGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCCGT 1077430 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| || | | |||||| | || |||| || || || | ||||||| | Sbjct 1077431 GGCACGCCGACGTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGTCC 1077490 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | | | ||| | ||| ||||| ||||| || ||||||||||||||| |||| ||| Sbjct 1077491 GCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGAGA 1077550 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| | | | ||| |||| | || || || || |||||||| |||| | | Sbjct 1077551 AGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACG 1077610 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GAC 112258 | |||||||| || ||||| ||| |||||||||| || ||| ||| || ||| Sbjct 1077611 GCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTC--GCGGTCGCAAGAC 1077668 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 | | || | || | ||||| | || || ||| || |||| |||||||| || | | Sbjct 1077669 CAT-CAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAACC 1077727 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| | Sbjct 1077728 CCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCA 1077787 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 | || |||||||| || ||||| ||| | || | | |||||| ||||| Sbjct 1077788 TTCGCAGCTCCAACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTG 1077847 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATT 112495 |||| ||||| || || ||||||| ||| || || || | | | |||| | | | Sbjct 1077848 TGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTACGTTGA-CTACA-ACAAGGGCGTGTA 1077905 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 ||| | ||| || || ||||| || || | || ||||| ||| | | || Sbjct 1077906 TGACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCGCATCAT 1077965 Query 112556 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 |||| || |||||||| ||| ||||| || || ||| | ||||| || Sbjct 1077966 TGATGTCAACCACTACCCCGTGCCCGAG---GCTCGCAACAGCAACATGCGCCACCGCCC 1078022 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTG 112671 || ||| | ||||| || ||||| || |||| ||| | || || ||| | |||| Sbjct 1078023 CATCGGTGTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTCGCTCTG-CGCATGCCCTTTG 1078081 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | |||| ||| || ||| | || || || || ||||| || || ||||| |||| Sbjct 1078082 AGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCACGCTGCTC 1078141 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | ||| |||| | || ||| || || | || |||| |||||| |||| Sbjct 1078142 TGTCGGCCTCGGTGGAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATGAGGGCTCTC 1078201 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 112851 | | || || || | || || ||||| |||||| | | || ||| | || | Sbjct 1078202 CCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCGACCTCTGGG 1078261 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 ||||||| || ||||| | |||||| | ||| |||| |||||||| || ||| Sbjct 1078262 ACTGGGATAGCCTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACAGTCTGCTGCTGG 1078321 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || ||| ||| | || || | || || || || |||||||| || | Sbjct 1078322 CTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGCCGT 1078381 Query 112972 ACACGACGAACATCTA 112987 |||| | || ||||| Sbjct 1078382 ACACCTCCAATATCTA 1078397 >seq9 Length=477563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 102181 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 102240 |||| || | || ||||| || ||||| ||||||||| ||| |||||| | | Sbjct 51847 AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGA 51788 Query 102241 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 102300 | | ||| |||||||||| || | ||||| || || ||||||||||||||| |||| Sbjct 51787 TCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCT 51728 Query 102301 CTCGTGACGAGGGACTCCAC 102320 | ||||||||||| || ||| Sbjct 51727 CGCGTGACGAGGGTCTGCAC 51708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742174980880