Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2 248 1e-60
>seq2
Length=2210479
Score = 248 bits (274), Expect = 1e-60
Identities = 1143/1792 (64%), Gaps = 61/1792 (3%)
Strand=Plus/Minus
Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610
|||| | ||||||| || || ||| |||| | ||||| |||||||| ||||||
Sbjct 1078781 TCAACAGTGAACTGGATAGGCGCCGCAGCAGCCTGGGTACGGAGGTAGTACATGCCGGTC 1078722
Query 105611 TTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTT 105670
||||| || | ||||| || | ||||| | || |||| |||||| ||
Sbjct 1078721 TTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTCC 1078662
Query 105671 TCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATA 105730
| |||| | |||| | || |||||||||||| |||||| | || |||||
Sbjct 1078661 TTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGATCGGCAGCCATC 1078602
Query 105731 TCAATGACATCCTTCATCTTG---ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787
| | |||| | || | |||||||| || || ||| ||| |||||| |||
Sbjct 1078601 TGCACGACAG---TGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCA 1078545
Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACCCC---CCGCCTTGACCATGAGATCCTTC 105844
| ||||| | || || || || || || | || ||| || | | ||||
Sbjct 1078544 GCAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGA---TGCGGTTCTTC 1078488
Query 105845 ATATCCTTGGACCAAAGACCAA--TCTTCTTGAGATCATTGACGAGATGCTTGTTGACAA 105902
|| | ||||| || |||| || || ||||| || | | |||||| |
Sbjct 1078487 ATCGAGTCCGACCACAGGCCAAGGTCGACT--AGATCGCGGAGCAACCACGGGTTGACCA 1078430
Query 105903 TCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGC 105962
| |||||||| || || | | | | ||||| || | ||||| || |||||||
Sbjct 1078429 CCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGCTCAAAGC 1078370
Query 105963 ATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGAC 106022
| || || || || | || || | ||| ||| || ||||| || |||| || ||||
Sbjct 1078369 ACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGAC 1078310
Query 106023 TGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-GC 106081
|||| |||| ||| | |||||| | ||||| || ||||||||| || | |
Sbjct 1078309 TGTTGCGAACACCGTGAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGG 1078250
Query 106082 TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCA 106141
| || || || |||| |||| ||||| || || | || || || |||||| ||||||
Sbjct 1078249 TGGGCTTGACATTCC-ACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCA 1078191
Query 106142 AATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG-CCTCCAGGGATGCGTG 106200
| || |||| || | | | || | || || | | || ||| | |||||
Sbjct 1078190 TAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTC-CACCGAGGCCGACAGAGCAGCGTG 1078132
Query 106201 ATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----T 106255
|| ||||| || ||||| | |||| |||| || || | || ||||| |
Sbjct 1078131 GTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCAT 1078072
Query 106256 GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTG 106315
||| || | | ||| |||| || ||||| |||||||| | ||| || || | |
Sbjct 1078071 GCGCAGAGCGAGGAAAG-----CATCGGCAAGACCCTGAACACCAACACCGATGGGGCGG 1078017
Query 106316 TGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACT 106372
|| ||||| || || | ||| || ||| ||||| || || |||||||
Sbjct 1078016 TGGCGCATGTTG--CTGTTGCG-AGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATG 1077960
Query 106373 CGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTG 106432
||||| || || | ||| | | | |||| || || || || ||| | ||| | |
Sbjct 1077959 CGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACACG 1077900
Query 106433 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 106492
| | | | | || || || || |||| || |||| ||||| |||||| |
Sbjct 1077899 CCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACACAGCCACC 1077840
Query 106493 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCC 106552
||||| | | |||||| | || ||||| |||| |||||| || ||| || |||
Sbjct 1077839 TCATCGGGAGCGCAGTACTCAATGATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCC 1077780
Query 106553 AAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 106612
| ||||| ||||| ||||| |||||| |||||||| |||||| |||| | ||
Sbjct 1077779 AGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCG 1077720
Query 106613 GTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT 106671
||||| ||||| | || ||| || || | ||||| | || | | || | |||| ||
Sbjct 1077719 GTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTG----ATGGTCTT 1077664
Query 106672 GG---CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 106728
| | || ||||| ||||||||||| ||| ||||| || |||||||| ||
Sbjct 1077663 GCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCA 1077604
Query 106729 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAAC 106788
||||| ||||| || || || || || | |||| ||| | | || ||| ||
Sbjct 1077603 GTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGAC 1077544
Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 106848
||||||||||| || || || |||||||| | || | |||||| || ||||
Sbjct 1077543 TCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTC 1077484
Query 106849 TTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 106908
|| | || || || || | || | |||||| | | || |||||||| |||||
Sbjct 1077483 CTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTC 1077424
Query 106909 AAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCG 106961
|| |||| || | | || ||| | | ||||| || | |||||||| |
Sbjct 1077423 GAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCC----TGGTCAACATAGCGGG 1077368
Query 106962 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 107021
| ||| ||| || ||||||||||| || || ||||||| || ||||| || ||
Sbjct 1077367 CGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGG 1077308
Query 107022 GAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACT 107081
|||| ||| | || | | | |||| | | ||||| || |||||| ||
Sbjct 1077307 CAATATAAGAACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCATCT 1077248
Query 107082 TTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 107141
| ||||| || || | | || || |||||||||| | || ||| |||||
Sbjct 1077247 TGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCA 1077188
Query 107142 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTT 107200
|| | | |||||||| || | ||| || || || |||||||| |||||||||||
Sbjct 1077187 TGTCAACCAGGAAGCACGACGAGAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAGGGTG 1077129
Query 107201 GGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258
|| | || || ||| | | |||| ||||||| || ||| ||||| | |||| |
Sbjct 1077128 GGGGAGGCATGGGTGA--AGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGCT 1077071
Query 107259 CAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310
| | || || || |||||| | || |||||||| | ||||| |||||
Sbjct 1077070 CGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGG 1077019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980586131960
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