Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 248 1e-60 >seq2 Length=2210479 Score = 248 bits (274), Expect = 1e-60 Identities = 1143/1792 (64%), Gaps = 61/1792 (3%) Strand=Plus/Minus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | ||||||| || || ||| |||| | ||||| |||||||| |||||| Sbjct 1078781 TCAACAGTGAACTGGATAGGCGCCGCAGCAGCCTGGGTACGGAGGTAGTACATGCCGGTC 1078722 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTT 105670 ||||| || | ||||| || | ||||| | || |||| |||||| || Sbjct 1078721 TTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTCC 1078662 Query 105671 TCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATA 105730 | |||| | |||| | || |||||||||||| |||||| | || ||||| Sbjct 1078661 TTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGATCGGCAGCCATC 1078602 Query 105731 TCAATGACATCCTTCATCTTG---ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 | | |||| | || | |||||||| || || ||| ||| |||||| ||| Sbjct 1078601 TGCACGACAG---TGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCA 1078545 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACCCC---CCGCCTTGACCATGAGATCCTTC 105844 | ||||| | || || || || || || | || ||| || | | |||| Sbjct 1078544 GCAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGA---TGCGGTTCTTC 1078488 Query 105845 ATATCCTTGGACCAAAGACCAA--TCTTCTTGAGATCATTGACGAGATGCTTGTTGACAA 105902 || | ||||| || |||| || || ||||| || | | |||||| | Sbjct 1078487 ATCGAGTCCGACCACAGGCCAAGGTCGACT--AGATCGCGGAGCAACCACGGGTTGACCA 1078430 Query 105903 TCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGC 105962 | |||||||| || || | | | | ||||| || | ||||| || ||||||| Sbjct 1078429 CCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGCTCAAAGC 1078370 Query 105963 ATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGAC 106022 | || || || || | || || | ||| ||| || ||||| || |||| || |||| Sbjct 1078369 ACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGAC 1078310 Query 106023 TGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-GC 106081 |||| |||| ||| | |||||| | ||||| || ||||||||| || | | Sbjct 1078309 TGTTGCGAACACCGTGAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGG 1078250 Query 106082 TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCA 106141 | || || || |||| |||| ||||| || || | || || || |||||| |||||| Sbjct 1078249 TGGGCTTGACATTCC-ACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCA 1078191 Query 106142 AATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG-CCTCCAGGGATGCGTG 106200 | || |||| || | | | || | || || | | || ||| | ||||| Sbjct 1078190 TAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTC-CACCGAGGCCGACAGAGCAGCGTG 1078132 Query 106201 ATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----T 106255 || ||||| || ||||| | |||| |||| || || | || ||||| | Sbjct 1078131 GTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCAT 1078072 Query 106256 GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTG 106315 ||| || | | ||| |||| || ||||| |||||||| | ||| || || | | Sbjct 1078071 GCGCAGAGCGAGGAAAG-----CATCGGCAAGACCCTGAACACCAACACCGATGGGGCGG 1078017 Query 106316 TGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACT 106372 || ||||| || || | ||| || ||| ||||| || || ||||||| Sbjct 1078016 TGGCGCATGTTG--CTGTTGCG-AGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATG 1077960 Query 106373 CGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTG 106432 ||||| || || | ||| | | | |||| || || || || ||| | ||| | | Sbjct 1077959 CGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACACG 1077900 Query 106433 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 106492 | | | | | || || || || |||| || |||| ||||| |||||| | Sbjct 1077899 CCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACACAGCCACC 1077840 Query 106493 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCC 106552 ||||| | | |||||| | || ||||| |||| |||||| || ||| || ||| Sbjct 1077839 TCATCGGGAGCGCAGTACTCAATGATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCC 1077780 Query 106553 AAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 106612 | ||||| ||||| ||||| |||||| |||||||| |||||| |||| | || Sbjct 1077779 AGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCG 1077720 Query 106613 GTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT 106671 ||||| ||||| | || ||| || || | ||||| | || | | || | |||| || Sbjct 1077719 GTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTG----ATGGTCTT 1077664 Query 106672 GG---CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 106728 | | || ||||| ||||||||||| ||| ||||| || |||||||| || Sbjct 1077663 GCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCA 1077604 Query 106729 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAAC 106788 ||||| ||||| || || || || || | |||| ||| | | || ||| || Sbjct 1077603 GTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGAC 1077544 Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 106848 ||||||||||| || || || |||||||| | || | |||||| || |||| Sbjct 1077543 TCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTC 1077484 Query 106849 TTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 106908 || | || || || || | || | |||||| | | || |||||||| ||||| Sbjct 1077483 CTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTC 1077424 Query 106909 AAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCG 106961 || |||| || | | || ||| | | ||||| || | |||||||| | Sbjct 1077423 GAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCC----TGGTCAACATAGCGGG 1077368 Query 106962 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 107021 | ||| ||| || ||||||||||| || || ||||||| || ||||| || || Sbjct 1077367 CGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGG 1077308 Query 107022 GAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACT 107081 |||| ||| | || | | | |||| | | ||||| || |||||| || Sbjct 1077307 CAATATAAGAACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCATCT 1077248 Query 107082 TTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 107141 | ||||| || || | | || || |||||||||| | || ||| ||||| Sbjct 1077247 TGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCA 1077188 Query 107142 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTT 107200 || | | |||||||| || | ||| || || || |||||||| ||||||||||| Sbjct 1077187 TGTCAACCAGGAAGCACGACGAGAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAGGGTG 1077129 Query 107201 GGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 || | || || ||| | | |||| ||||||| || ||| ||||| | |||| | Sbjct 1077128 GGGGAGGCATGGGTGA--AGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGCT 1077071 Query 107259 CAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | | || || || |||||| | || |||||||| | ||||| ||||| Sbjct 1077070 CGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGG 1077019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980586131960