Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq25 104 2e-16 seq27 87.8 1e-11 >seq25 Length=4183617 Score = 104 bits (114), Expect = 2e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||| | |||||||| || || |||||||||||| ||| || || || ||| Sbjct 2871350 ATCGGTATCGATCTCGGAACCACTTACAGCTGTGTTGGTGTTATGCAGAAGGGCAAGGTT 2871291 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||| | | ||| || || |||||| | | ||||| |||||||| | ||||| || Sbjct 2871290 GAGATTCTCGTCAACGACCAGGGTAACCGTATCACTCCTTCTTATGTGGCCTTCACCGAG 2871231 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || | || ||||| ||||| || || | || ||| ||| || || | ||| || Sbjct 2871230 GACGAGCGGTTGGTTGGAGATGCGGCCAAGAACCAGGCCGCTGCCAACCCCATCAACACC 2871171 Query 550175 ATTTTTGATG 550184 || ||||||| Sbjct 2871170 ATCTTTGATG 2871161 >seq27 Length=2670746 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || || || || ||||| || || || |||||||| | ||| Sbjct 1988919 ACCGTTCCTGCCTACTTCAACGATTCGCAGCGTCAGGCCACCAAGGATGCTGGCCAAATT 1988860 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || ||||||||||| ||| || |||| || || ||||| ||||| || || || || Sbjct 1988859 GCCGGCCTTAATGTTCTGCGTGTTGTCAACGAGCCCACTGCCGCTGCCCTGGCCTACGGT 1988800 Query 550529 CTTGATAA 550536 ||||| || Sbjct 1988799 CTTGAGAA 1988792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294466349210