Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 459 5e-124 seq9 273 4e-68 >seq2 Length=2210479 Score = 459 bits (508), Expect = 5e-124 Identities = 1030/1518 (68%), Gaps = 53/1518 (3%) Strand=Plus/Minus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | ||||| | | |||||| | || || ||||| Sbjct 1078439 GGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTAC 1078380 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||| | || ||||||||| || |||||||| | || ||||| ||||||||||||||| Sbjct 1078379 GGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCC 1078320 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGCCCAGT 213084 | ||| |||||||| | || ||||| ||| | | || | ||| | |||||| Sbjct 1078319 AGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTG-CTCCTTCAGGCTAT-CCCAGT 1078262 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| ||||| | ||| || ||||||||||||||||||| ||| || | Sbjct 1078261 CCCAG---------AGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGGATACCCT 1078211 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 ||||| ||||| || | |||||||| || | ||||||||| | ||| | Sbjct 1078210 GAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACCG 1078151 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 | ||| ||| ||||||| ||||||||| || || |||| | ||| |||| | |||| Sbjct 1078150 AGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCT 1078091 Query 213265 CTGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 | | |||| |||||||| || ||| |||| |||| || || ||||| || || Sbjct 1078090 CGGCGGACTCAAAGGGCATGCGCAGAGCGA-GGAAAGCATCGGCAAGACCCTGAACACCA 1078032 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTT 213382 | |||||||| | ||| | || ||| ||| |||| ||| || |||||| ||| Sbjct 1078031 ACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCGGGCACGGGGTAGTGGTT 1077973 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | || ||||| ||| ||||||||| |||| ||||||| | | ||| | ||| Sbjct 1077972 GACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTC 1077913 Query 213443 ---GTGATTGAACACGTAGCCCCCGTCCTGCACAAACT---CAGGCAGGGCGATGCTGGC 213496 || || ||||| ||| || | ||| | | ||||| |||| | ||| Sbjct 1077912 AAAGTCAT---ACACG---CCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAGGGAGGC 1077859 Query 213497 CAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||||||||| || |||||||| | | ||| | |||||| |||||||| |||||||||| Sbjct 1077858 CAGGTTGCACACAGCCACCTCATCGGGAG-CGCAGTACTCAATGATCTCTGTGCACAGGT 1077800 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTG 213614 || || || ||||| |||||||||| ||||| ||| ||| | |||| |||||| Sbjct 1077799 TGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTG 1077741 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 || |||||| ||||| |||||||| ||| | | | || || | ||| || | | Sbjct 1077740 TACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGCTTC 1077681 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 ||||||| | | ||| || | | ||||||||||| ||||| || | Sbjct 1077680 TGAGCCTTGATGGTCTTGC-GACCGCGACCCTC--AGCCTCGTACTTCTCGTACAGGGCC 1077624 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 | ||| || | ||| || | | || || || || ||| ||||| || || Sbjct 1077623 TCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTC 1077564 Query 213795 CAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 || || ||| | |||| ||||| || |||||| || || |||| |||||| || ||| Sbjct 1077563 CACTCGGCGTTCTTCTC-GACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAA 1077505 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 || || |||| | ||| ||| |||| || ||||||||||| | || || || Sbjct 1077504 CAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAA 1077445 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCC 213970 | ||| |||||||||||||| | |||||||||||||||||| | || | |||||||| Sbjct 1077444 CACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCC 1077385 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 |||||| || | ||| ||||||| | ||| || | ||| | | || ||||| Sbjct 1077384 CTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGA 1077325 Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGAGC 214088 | || |||||||| || ||||| || |||| || | | | || ||| |||| Sbjct 1077324 CGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACATTGAGA-- 1077267 Query 214089 CCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCG 214148 || |||||||| || ||||||||||||||||||| | | | || || ||| || Sbjct 1077266 CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCC 1077207 Query 214149 GCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGA 214207 | ||||||||||| | | || | || |||||| |||||||| ||||||| | | Sbjct 1077206 TCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCT-GGGCCTGCGGGGT 1077148 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 |||| |||||| || |||||| ||||||| | | |||||| | || | | |||| Sbjct 1077147 ACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTA 1077088 Query 214268 GGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCAT 214327 |||||| | ||| || || || ||| | ||| | ||| | ||| Sbjct 1077087 GGTCTCGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCAT 1077028 Query 214328 GTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCCAG 214384 ||||||||| | ||| | || ||| | | |||||||||||| || ||||| || Sbjct 1077027 GTGCTGGGGGCGCTCGA-CAATC--TTGCCGTCAAGCTTGAGCAGGTAAGACCGCTCTAG 1076971 Query 214385 AGTCTTGAACCCAAAGTA 214402 |||||||| |||||||| Sbjct 1076970 GGTCTTGAAGCCAAAGTA 1076953 >seq9 Length=477563 Score = 273 bits (302), Expect = 4e-68 Identities = 579/853 (68%), Gaps = 32/853 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| || ||| |||||||||||| Sbjct 51405 CTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTC 51464 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || | || |||| ||| | |||||| Sbjct 51465 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAGA-CCTTGTCGTTGCCGAGAGCCACCAGCA 51523 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||| |||||| ||||||||| | |||| Sbjct 51524 GGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGG 51583 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| ||||| |||| ||||||| ||| || |||||| || | | Sbjct 51584 CGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCATCGGTGA-----T 51638 Query 48078 GCTTAACGCGGGACTCTGA-GGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATG 48130 | || | | ||| ||| | ||| || | ||||||| || |||||| | Sbjct 51639 GATT--CTCTGGA---TGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGGAGAAGAGCAGG 51693 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||| ||||| |||||| || ||||| || ||| ||| ||||||||||| || Sbjct 51694 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 51753 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || |||| |||||| || | || ||| | || ||||||| Sbjct 51754 CCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 51813 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGA 48309 |||||||| || || || || || || | || ||| | || | | ||||| |||| Sbjct 51814 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGA 51873 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | |||||||| |||||||| |||||| || || || || ||||| Sbjct 51874 -ATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 51932 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTA 48426 |||||| ||| || | ||| | ||||| | |||||||| | ||| Sbjct 51933 GAAGAGGAAGGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGC---GAGTA 51989 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||| ||||| | ||||| || ||||||||| ||||||||| | ||||||| Sbjct 51990 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGG 52049 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 ||||||||| || | | ||| | ||| | ||| ||||| ||||| || || || || || Sbjct 52050 CACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACGC 52109 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----AT 48602 || ||||||||||| | || | ||| ||||||| | ||| || || | Sbjct 52110 GGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAG-GCGGTTGT 52168 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||||| | || | || ||| |||||| | || || | |||||||| || || | Sbjct 52169 TCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAG 52228 Query 48663 CTTTTTTGTACAT 48675 | || |||||||| Sbjct 52229 CCTTCTTGTACAT 52241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532462319360