Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 302 8e-77 seq9 233 4e-56 >seq2 Length=2210479 Score = 302 bits (334), Expect = 8e-77 Identities = 855/1284 (67%), Gaps = 57/1284 (4%) Strand=Plus/Minus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 || ||| |||||||||||||||||||| |||||| || ||| || ||| | ||||||| Sbjct 1078146 CGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAG-CTCCCGAGCCTCGG 1078088 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 || |||||||| ||||| | | ||||| | ||||| || ||||| || || | Sbjct 1078087 CGGACTCAAAGGGCATGCGCAG-AGCGAGGAAAG-CATCGGCAAGACCCTGAACACCAAC 1078030 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTG 221590 ||||||||| | ||| | | ||||| | ||| || || |||||||| || |||| Sbjct 1078029 ACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGA--GCCTCGGGCACGGGGTAGTGGTTG 1077972 Query 221591 ACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650 || || || | || ||||||| || ||| ||||||| ||| | || || Sbjct 1077971 ACATCAATGA------TGCGGTTCAGGTTGCGGAC---AACCACCATGGTGACCTCGTGC 1077921 Query 221651 TGATTG---AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707 | || || | || |||| || || | || || | ||| || || Sbjct 1077920 AGCTTCTCAAAGTCATACACGCCCTTGTTGTAG------TCAACGTAGGCGGGCAGAGCG 1077867 Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767 | | ||||||||| ||||| |||||||| || | |||| ||||||||||| Sbjct 1077866 AGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTG 1077807 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 || |||||| || ||||| ||||||| || || || |||||| ||| ||| | Sbjct 1077806 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTG 1077748 Query 221828 -TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 |||||||| ||||| ||||| ||| ||||| ||||||| | || || || ||| Sbjct 1077747 GTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCA 1077688 Query 221887 GAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTA 221944 || | |||| || | | ||| | ||| || |||||| | || | | | || || Sbjct 1077687 CAGCT-TCTGAGCCTTGATGGTCTTGC-GACCGCGACCCTCAGCCTCGTACTTCTCG-TA 1077631 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 || || | | |||| || ||||| ||| | || || || ||| | ||| ||| Sbjct 1077630 CAGGGCCT--CGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCAC 1077573 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 |||||| |||| | ||| | | ||| | || ||||||||| || ||||||||||| Sbjct 1077572 ATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGA 1077513 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 ||| | || | |||||||| || ||||||| || | || || | |||||||| Sbjct 1077512 GCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATG 1077453 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 ||||| || | ||| |||||||||||||| || |||| ||| | |||||||| |||||| Sbjct 1077452 AACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTG 1077393 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAG 222243 ||||| ||||| | || ||| | | | |||||| | |||||| | || | | Sbjct 1077392 TTGCCGCCCTGGT-CAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGAT 1077334 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGC 222303 || ||||| || ||||| || ||| || | |||| || | || ||| || Sbjct 1077333 ACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCAC---GGATAC-GGT 1077278 Query 222304 AGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 ||||| || || ||||| || || ||||||||||||||| ||||||| |||| Sbjct 1077277 GGACATTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGT 1077218 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||| ||||| || ||| ||||| | || | ||| || || ||||| | ||| | Sbjct 1077217 CATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTGGG 1077158 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | | || || ||||| || || ||||| ||| || || ||| | || |||| Sbjct 1077157 CCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACA 1077098 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGC 222536 ||| | ||| ||||| | ||| | ||| |||||| ||| || ||| | || Sbjct 1077097 TCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGA---TGCCAACAGCAA 1077041 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 | |||| ||||| |||||| | ||| ||| || | |||| ||||||||| Sbjct 1077040 CACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCT--TGAGCAGGTA 1076983 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654 || || || |||||||| |||||||| | | || ||||| | | | | || | Sbjct 1076982 AGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAAT 1076923 Query 222655 GGCGGCGTCCAGCTCCGACTTGTG 222678 ||| | |||||||||| ||| || Sbjct 1076922 GGCCGAGTCCAGCTCCTCCTTATG 1076899 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| ||||| ||||| ||||| | ||||| | | |||||| | || || ||| |||| Sbjct 1078437 GTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGG 1078378 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || |||||||||||| || ||||| | || ||||| ||||||||||| |||| Sbjct 1078377 CTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAG 1078318 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 1078317 CAGCAGACTGTTGCG 1078303 >seq9 Length=477563 Score = 233 bits (258), Expect = 4e-56 Identities = 577/863 (67%), Gaps = 36/863 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||| ||||| ||||| || ||| Sbjct 52250 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 52191 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTC-TCA 25591 ||||||| || | | |||| || || ||| || | ||||||| | | ||| || Sbjct 52190 TCCAAGGATATCCATGACTGGAACAACCGC-CTAACCGATGACGAGC-GTTTCTTCATCT 52133 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || | | || ||||| || || ||||| || || || |||||||| ||| |||| Sbjct 52132 CGCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGC 52073 Query 25652 GATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| | || |||||| | | || ||||| || |||||||| |||||||| Sbjct 52072 GTTTCAGCGCCGAGGTGCAGGTGCCTG-AGGCCCGCTGCTTCTACGGCTTCCAGATCATG 52014 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA- 25766 || || || | ||||| ||| || | ||| || || || ||||| | || Sbjct 52013 ATGGAGAACATCCACTCCGAGACCTACTC---GCTGCTCATTGACACCTACATCAAGGAG 51957 Query 25767 -CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | |||| | | || || || ||||| || ||| ||| ||||| | || Sbjct 51956 CCCTCGCAGCGCACCTTC--CTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGA 51899 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAG-AG-CG--CTACGTTTGGCGAGCGG 25881 |||| |||||||| ||||| | | || || || ||||| || |||| Sbjct 51898 AGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTCGTCCTACG----GCCAGCGC 51843 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 ||||| |||||||| || || ||||||||||| ||||||||| | || || | |||||| Sbjct 51842 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 51783 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||| ||||| || || | |||||||| ||| ||| ||||||||||| ||| | Sbjct 51782 TGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGT 51723 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 ||||||||||| |||| || || ||||||||||||| | | |||| | ||| Sbjct 51722 GACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTC---CCACCTCAAGCAC-CG 51667 Query 26062 CCTTCTCAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119 || |||| ||| | || | || ||||||| || || |||| || ||| |||||| Sbjct 51666 CCCCAGCAAG-GACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATTGAGCAGGAGT 51608 Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179 | ||||||||||| || || |||| || | Sbjct 51607 TCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 51548 Query 26180 ACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||| |||| || ||||||| ||||| ||| | || || || || |||||| Sbjct 51547 ACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGC-TCTCGGCAACGACAAGGTCTACAAG 51489 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 | | ||||| |||||||| ||||| ||||| ||| ||| || ||||||||||||||| Sbjct 51488 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTT 51429 Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321 || ||| | || |||||||| || Sbjct 51428 GAGAAGCGTGTTGGCGACTACCA 51406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844463293760