Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 302 8e-77
seq9 233 4e-56
>seq2
Length=2210479
Score = 302 bits (334), Expect = 8e-77
Identities = 855/1284 (67%), Gaps = 57/1284 (4%)
Strand=Plus/Minus
Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474
|| ||| |||||||||||||||||||| |||||| || ||| || ||| | |||||||
Sbjct 1078146 CGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAG-CTCCCGAGCCTCGG 1078088
Query 221475 GAGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532
|| |||||||| ||||| | | ||||| | ||||| || ||||| || || |
Sbjct 1078087 CGGACTCAAAGGGCATGCGCAG-AGCGAGGAAAG-CATCGGCAAGACCCTGAACACCAAC 1078030
Query 221533 ACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTG 221590
||||||||| | ||| | | ||||| | ||| || || |||||||| || ||||
Sbjct 1078029 ACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGA--GCCTCGGGCACGGGGTAGTGGTTG 1077972
Query 221591 ACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650
|| || || | || ||||||| || ||| ||||||| ||| | || ||
Sbjct 1077971 ACATCAATGA------TGCGGTTCAGGTTGCGGAC---AACCACCATGGTGACCTCGTGC 1077921
Query 221651 TGATTG---AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707
| || || | || |||| || || | || || | ||| || ||
Sbjct 1077920 AGCTTCTCAAAGTCATACACGCCCTTGTTGTAG------TCAACGTAGGCGGGCAGAGCG 1077867
Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767
| | ||||||||| ||||| |||||||| || | |||| |||||||||||
Sbjct 1077866 AGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTG 1077807
Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827
|| |||||| || ||||| ||||||| || || || |||||| ||| ||| |
Sbjct 1077806 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTG 1077748
Query 221828 -TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886
|||||||| ||||| ||||| ||| ||||| ||||||| | || || || |||
Sbjct 1077747 GTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCA 1077688
Query 221887 GAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTA 221944
|| | |||| || | | ||| | ||| || |||||| | || | | | || ||
Sbjct 1077687 CAGCT-TCTGAGCCTTGATGGTCTTGC-GACCGCGACCCTCAGCCTCGTACTTCTCG-TA 1077631
Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004
|| || | | |||| || ||||| ||| | || || || ||| | ||| |||
Sbjct 1077630 CAGGGCCT--CGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCAC 1077573
Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064
|||||| |||| | ||| | | ||| | || ||||||||| || |||||||||||
Sbjct 1077572 ATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGA 1077513
Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124
||| | || | |||||||| || ||||||| || | || || | ||||||||
Sbjct 1077512 GCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATG 1077453
Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184
||||| || | ||| |||||||||||||| || |||| ||| | |||||||| ||||||
Sbjct 1077452 AACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTG 1077393
Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAG 222243
||||| ||||| | || ||| | | | |||||| | |||||| | || | |
Sbjct 1077392 TTGCCGCCCTGGT-CAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGAT 1077334
Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGC 222303
|| ||||| || ||||| || ||| || | |||| || | || ||| ||
Sbjct 1077333 ACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCAC---GGATAC-GGT 1077278
Query 222304 AGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359
||||| || || ||||| || || ||||||||||||||| ||||||| ||||
Sbjct 1077277 GGACATTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGT 1077218
Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419
| ||| ||||| || ||| ||||| | || | ||| || || ||||| | ||| |
Sbjct 1077217 CATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTGGG 1077158
Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479
| | || || ||||| || || ||||| ||| || || ||| | || ||||
Sbjct 1077157 CCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACA 1077098
Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGC 222536
||| | ||| ||||| | ||| | ||| |||||| ||| || ||| | ||
Sbjct 1077097 TCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGA---TGCCAACAGCAA 1077041
Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594
| |||| ||||| |||||| | ||| ||| || | |||| |||||||||
Sbjct 1077040 CACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCT--TGAGCAGGTA 1076983
Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654
|| || || |||||||| |||||||| | | || ||||| | | | | || |
Sbjct 1076982 AGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAAT 1076923
Query 222655 GGCGGCGTCCAGCTCCGACTTGTG 222678
||| | |||||||||| ||| ||
Sbjct 1076922 GGCCGAGTCCAGCTCCTCCTTATG 1076899
Score = 113 bits (124), Expect = 8e-20
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| ||||| ||||| ||||| | ||||| | | |||||| | || || ||| ||||
Sbjct 1078437 GTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGG 1078378
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|| | || |||||||||||| || ||||| | || ||||| ||||||||||| ||||
Sbjct 1078377 CTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAG 1078318
Query 221236 CAGCAGACTGTTGCG 221250
|||||||||||||||
Sbjct 1078317 CAGCAGACTGTTGCG 1078303
>seq9
Length=477563
Score = 233 bits (258), Expect = 4e-56
Identities = 577/863 (67%), Gaps = 36/863 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| | ||| |||||| ||||| ||||| || |||
Sbjct 52250 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 52191
Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTC-TCA 25591
||||||| || | | |||| || || ||| || | ||||||| | | ||| ||
Sbjct 52190 TCCAAGGATATCCATGACTGGAACAACCGC-CTAACCGATGACGAGC-GTTTCTTCATCT 52133
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
| || | | || ||||| || || ||||| || || || |||||||| ||| ||||
Sbjct 52132 CGCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGC 52073
Query 25652 GATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710
| |||| | || |||||| | | || ||||| || |||||||| ||||||||
Sbjct 52072 GTTTCAGCGCCGAGGTGCAGGTGCCTG-AGGCCCGCTGCTTCTACGGCTTCCAGATCATG 52014
Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA- 25766
|| || || | ||||| ||| || | ||| || || || ||||| | ||
Sbjct 52013 ATGGAGAACATCCACTCCGAGACCTACTC---GCTGCTCATTGACACCTACATCAAGGAG 51957
Query 25767 -CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825
| |||| | | || || || ||||| || ||| ||| ||||| | ||
Sbjct 51956 CCCTCGCAGCGCACCTTC--CTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGA 51899
Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAG-AG-CG--CTACGTTTGGCGAGCGG 25881
|||| |||||||| ||||| | | || || || ||||| || ||||
Sbjct 51898 AGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTCGTCCTACG----GCCAGCGC 51843
Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941
||||| |||||||| || || ||||||||||| ||||||||| | || || | ||||||
Sbjct 51842 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 51783
Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001
||| ||||| || || | |||||||| ||| ||| ||||||||||| ||| |
Sbjct 51782 TGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGT 51723
Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061
||||||||||| |||| || || ||||||||||||| | | |||| | |||
Sbjct 51722 GACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTC---CCACCTCAAGCAC-CG 51667
Query 26062 CCTTCTCAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119
|| |||| ||| | || | || ||||||| || || |||| || ||| ||||||
Sbjct 51666 CCCCAGCAAG-GACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATTGAGCAGGAGT 51608
Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179
| ||||||||||| || || |||| || |
Sbjct 51607 TCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 51548
Query 26180 ACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238
|||| |||| || ||||||| ||||| ||| | || || || || ||||||
Sbjct 51547 ACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGC-TCTCGGCAACGACAAGGTCTACAAG 51489
Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298
| | ||||| |||||||| ||||| ||||| ||| ||| || |||||||||||||||
Sbjct 51488 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTT 51429
Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321
|| ||| | || |||||||| ||
Sbjct 51428 GAGAAGCGTGTTGGCGACTACCA 51406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844463293760
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