Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 212 7e-50 >seq2 Length=2210479 Score = 212 bits (234), Expect = 7e-50 Identities = 941/1470 (64%), Gaps = 49/1470 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| | || || |||| ||| || |||| | Sbjct 1076953 TACTTTGGCTTCAAGACCCTAGAGCGGTCTTACCTGCTCAA--GCTTGACGGCAAGATTG 1077010 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || ||| ||| ||||| ||||||| || || | |||||| || || || | | Sbjct 1077011 TCGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATCTGGGGAGACAACGTCG 1077070 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 75321 | |||| | ||||| ||| || ||||||| |||| | | ||| || || | || Sbjct 1077071 AGCGTGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCATGCCTCCCC 1077128 Query 75322 AACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCA 75380 ||||||||||| |||||||| || || || ||| | || |||||||| | | || Sbjct 1077129 CACCCTCTTCAACGCTGGTACCCCGCAGGCC-CAGCTCTCGTCGTGCTTCCTGGTTGACA 1077187 Query 75381 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 75440 ||||| ||| || | |||||||||| || || | | || || ||||| | Sbjct 1077188 TGAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCA 1077247 Query 75441 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 75500 || |||||| || ||||| | | |||| | | | || | ||| |||| Sbjct 1077248 AGATGGCTGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTCTTATATTG 1077307 Query 75501 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || ||||| || ||||||| || || ||||||||||| || ||| ||| | Sbjct 1077308 CCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAACACCG 1077367 Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTCG-CAAG------GGGTCCATCGCGGTCTACTTG 75613 | |||||||| | || ||||| | |||| || || | || ||||| | Sbjct 1077368 CCCGCTATGTTGACCA----GGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCTC 1077423 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAA 75673 || || ||||| ||||| | | |||||| | || | || || || || | || Sbjct 1077424 GAGCCGTGGCACGCCGACGTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAGGAG 1077483 Query 75674 GAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 |||| || |||||| | || | |||||||| || || || ||||||||||| Sbjct 1077484 GAGGTCCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAGCGA 1077543 Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793 || ||| || | | ||| |||| | || || || || || ||||| ||||| Sbjct 1077544 GTCGAGAAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGAC 1077603 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAG---CC 75850 || |||||||| || ||||| ||| ||||| || | |||||| | | | Sbjct 1077604 TGCTACGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGC 1077663 Query 75851 AATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 || ||| | | || | | || | | ||| | || || ||| | | ||||| ||||| Sbjct 1077664 AA---GACCAT-CAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGAC 1077719 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || | || | ||||| |||||||| || ||| ||||| ||||| ||||| | Sbjct 1077720 CGGCAACCCCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCT 1077779 Query 75970 GGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGA 76029 ||| || || ||||| || || ||||| || || | |||||| | | ||||| Sbjct 1077780 GGGTACCATTCGCAGCTCCAACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATGA 1077839 Query 76030 GACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCG 76089 | |||||| ||||| |||| || |||| || || || || | | | | | Sbjct 1077840 GGTGGCTGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTACGTTGACTACAACAAGGG 1077899 Query 76090 CACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCG 76149 | | ||| | ||| || || || || |||| | | | ||| | || || ||||| Sbjct 1077900 CGTGTATGACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCG 1077959 Query 76150 AGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACA 76206 ||||||| || || ||||| ||| || ||| | || || ||||| || Sbjct 1077960 CATCATTGATGTCAACCACTACCCCGTGCCCGAGGCT-CGCAACAG--CAACATGCGCCA 1078016 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 | | || || ||| | |||||||| ||||| || |||| ||| | | || ||| Sbjct 1078017 CCGCCCCATCGGTGTTGGTGTTCAGGGTCTTGCCGATG-----CTTTCCTCGCTCTGCGC 1078071 Query 76267 A-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 | ||||| || | || || |||| |||| | ||||| || ||||| || Sbjct 1078072 ATGCCCTTTGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTAC 1078131 Query 76322 CACGCATCCCTGGAGG-CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATT 76380 ||||| | ||| || | | || || | || | | | || |||| || | Sbjct 1078132 CACGCTGCTCTGTCGGCCTCGGTG-GAGATCGCCAAGGAGGAGGGAACCTACTCCACCTA 1078190 Query 76381 TGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA 76440 |||||| ||||||| || || || | || |||||||| |||| |||| || || || | Sbjct 1078191 TGAGGGCTCTCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGT-GGAATGTCAAGCCCA 1078249 Query 76441 GC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 76499 | | || ||||||||| || ||||| | |||||| | ||| |||| |||| Sbjct 1078250 CCGACCTCTGGGACTGGGATAGCCTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACA 1078309 Query 76500 GTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 |||| || |||| || ||||| || ||| ||| | || || | || || || || | Sbjct 1078310 GTCTGCTGCTGGCTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGT 1078369 Query 76560 GCTTTGAACCATACACAACAAACATCTACC 76589 ||||||| || ||||| | || ||||||| Sbjct 1078370 GCTTTGAGCCGTACACCTCCAATATCTACC 1078399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569383743520