Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq23 125 2e-23
seq26 91.5 4e-13
seq2 91.5 4e-13
>seq23
Length=4176071
Score = 125 bits (138), Expect = 2e-23
Identities = 179/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651
||||||||| || ||||| ||| | || || || || || || || | ||| ||||
Sbjct 2246078 ACGACGCTGGATGTAACCGGTTTCGGCAGTCTTGACTGCAGTGTCGATCAAACCTTCACG 2246137
Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711
|||| |||| || |||||||| | ||| ||| || || | || | ||||| ||||
Sbjct 2246138 ACCAGCCATGGCGTGGAAGAAGAACTCGGACGGGGTTAATCCACGAAGATAGGAGTTCTC 2246197
Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771
||| || ||||| || |||||||| | ||| |||||| ||||| || || || | ||
Sbjct 2246198 AACAAACCCACGAGCTTCGGGCGAGTAATCGTCCTTGGTGAAGTGGGGAAGAGTGCGGTA 2246257
Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831
|| |||| | || ||||||||||| || || ||||||| |||| || ||||
Sbjct 2246258 CTTGAAGCCAAAGGGAATACGCTTTCCCTCGACAATCTGCTGGCCCACAAGCGCCGTCAT 2246317
Query 302832 CTGCGAAATATT 302843
||| ||||| ||
Sbjct 2246318 CTGGGAAATGTT 2246329
>seq26
Length=2648925
Score = 91.5 bits (100), Expect = 4e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 251430 ATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGA-GATGCAC 251488
|||||| | | |||| || || | ||| | || || |||| ||| ||| | ||||
Sbjct 2473276 ATGGACACGGAAAGCGTCGGACACTTCAAACAGACGCTCCTTCAGGAA-CGACGCCGCAC 2473334
Query 251489 CGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCC 251548
|||| | |||||| ||||||||||||||||| ||||| || |||||||| || || || |
Sbjct 2473335 CGTGAGCAATCATGCAATCACGCTCCATTTCTCCGAATCGGAGACCACCGTCACGCGCAC 2473394
Query 251549 TACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCT 251608
|||||| | ||||| || || | | || ||||| || ||| || ||
Sbjct 2473395 GACCCTCCACCGGCTGGCGCGTCATGATCTGCACCGGACCACGGGCACGGGCGTGGATCT 2473454
Query 251609 TATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657
| || | ||||| || ||||||||||||| | | || |||| |||
Sbjct 2473455 TGTCGTCCACCATGTGGCGGAGACGCTGGTAGTAGGTCGGGCCGAAGAA 2473503
>seq2
Length=2210479
Score = 91.5 bits (100), Expect = 4e-13
Identities = 209/312 (67%), Gaps = 2/312 (1%)
Strand=Plus/Minus
Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119
||||| ||||| || ||||| || || || || ||||| || | ||||| || || |||
Sbjct 1077392 TTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATA 1077333
Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179
|||||||| ||||||||||||||| ||||| ||||| | | || | | || | |
Sbjct 1077332 CCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACA 1077273
Query 156180 TGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238
| || ||||| ||||| | |||| || || || ||||| ||| | || | |
Sbjct 1077272 TTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATA 1077214
Query 156239 AATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCG 156298
||||| ||||| ||||| | ||| | || ||||||| | || | |
Sbjct 1077213 GATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTGGGCCTG 1077154
Query 156299 TGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATA 156358
|| || ||||||||||| || || || | ||||| | || |||| | ||||| |
Sbjct 1077153 CGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAA 1077094
Query 156359 ATCGTATGTCTC 156370
| ||| |||||
Sbjct 1077093 GTTGTAGGTCTC 1077082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817053127773
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |