Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq23 125 2e-23 seq26 91.5 4e-13 seq2 91.5 4e-13 >seq23 Length=4176071 Score = 125 bits (138), Expect = 2e-23 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 ||||||||| || ||||| ||| | || || || || || || || | ||| |||| Sbjct 2246078 ACGACGCTGGATGTAACCGGTTTCGGCAGTCTTGACTGCAGTGTCGATCAAACCTTCACG 2246137 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||| |||| || |||||||| | ||| ||| || || | || | ||||| |||| Sbjct 2246138 ACCAGCCATGGCGTGGAAGAAGAACTCGGACGGGGTTAATCCACGAAGATAGGAGTTCTC 2246197 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||| || ||||| || |||||||| | ||| |||||| ||||| || || || | || Sbjct 2246198 AACAAACCCACGAGCTTCGGGCGAGTAATCGTCCTTGGTGAAGTGGGGAAGAGTGCGGTA 2246257 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 || |||| | || ||||||||||| || || ||||||| |||| || |||| Sbjct 2246258 CTTGAAGCCAAAGGGAATACGCTTTCCCTCGACAATCTGCTGGCCCACAAGCGCCGTCAT 2246317 Query 302832 CTGCGAAATATT 302843 ||| ||||| || Sbjct 2246318 CTGGGAAATGTT 2246329 >seq26 Length=2648925 Score = 91.5 bits (100), Expect = 4e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 251430 ATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGA-GATGCAC 251488 |||||| | | |||| || || | ||| | || || |||| ||| ||| | |||| Sbjct 2473276 ATGGACACGGAAAGCGTCGGACACTTCAAACAGACGCTCCTTCAGGAA-CGACGCCGCAC 2473334 Query 251489 CGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCC 251548 |||| | |||||| ||||||||||||||||| ||||| || |||||||| || || || | Sbjct 2473335 CGTGAGCAATCATGCAATCACGCTCCATTTCTCCGAATCGGAGACCACCGTCACGCGCAC 2473394 Query 251549 TACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCT 251608 |||||| | ||||| || || | | || ||||| || ||| || || Sbjct 2473395 GACCCTCCACCGGCTGGCGCGTCATGATCTGCACCGGACCACGGGCACGGGCGTGGATCT 2473454 Query 251609 TATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 | || | ||||| || ||||||||||||| | | || |||| ||| Sbjct 2473455 TGTCGTCCACCATGTGGCGGAGACGCTGGTAGTAGGTCGGGCCGAAGAA 2473503 >seq2 Length=2210479 Score = 91.5 bits (100), Expect = 4e-13 Identities = 209/312 (67%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 ||||| ||||| || ||||| || || || || ||||| || | ||||| || || ||| Sbjct 1077392 TTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATA 1077333 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 |||||||| ||||||||||||||| ||||| ||||| | | || | | || | | Sbjct 1077332 CCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACA 1077273 Query 156180 TGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238 | || ||||| ||||| | |||| || || || ||||| ||| | || | | Sbjct 1077272 TTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATA 1077214 Query 156239 AATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCG 156298 ||||| ||||| ||||| | ||| | || ||||||| | || | | Sbjct 1077213 GATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTGGGCCTG 1077154 Query 156299 TGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATA 156358 || || ||||||||||| || || || | ||||| | || |||| | ||||| | Sbjct 1077153 CGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAA 1077094 Query 156359 ATCGTATGTCTC 156370 | ||| ||||| Sbjct 1077093 GTTGTAGGTCTC 1077082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817053127773