Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28 194 2e-43 seq2 158 1e-32 seq9 149 8e-30 seq25 140 4e-27 seq3 102 1e-15 seq1 95.1 1e-13 seq24 89.7 6e-12 >seq28 Length=5637848 Score = 194 bits (214), Expect = 2e-43 Identities = 282/397 (71%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 18092 CCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGT 18151 ||| ||| |||||||| ||||| | |||||||||||| ||||| || |||||| Sbjct 3121528 CCAGCTTCGGCGAGTCCCACGGCAAAGCCGTCGGCTGCATTGTCGACTGCCCGCCGCCAG 3121587 Query 18152 GCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGG 18211 || || | ||| |||| |||||||||||||| || | | || ||||| || ||||| Sbjct 3121588 GCCTGGCGCTGACCGAAGCCGACATCCAGCCGCAACTCAACCGCCGCCGGCCCGGCCAAA 3121647 Query 18212 GCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGA 18271 || | | ||||||||||| ||||| || ||||| | ||||| || ||||| ||| Sbjct 3121648 GCTCGATCACCACGCCGCGCGACGAGAAGGACCGCGTGACCATCCTCTCCGGCACCGAGG 3121707 Query 18272 ACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCG 18331 |||| ||||||| ||| |||| || |||| | || |||||| |||||||| || Sbjct 3121708 CCGGCTTCACGCTGGGCACGCCGCTCAGCCTGGTGGTCGCCAACGAAGACCAGCGCCCGC 3121767 Query 18332 TCGACTA---TTCCGACATGTGCAAGGTG---CCGCGGCCCTCACACGCCGACTACACCT 18385 |||||| || || | | || ||||||||| |||||||||| ||||| Sbjct 3121768 ACGACTACGGCGGCGCCACCGTCGACCTGTACCCGCGGCCCAGCCACGCCGACTTCACCT 3121827 Query 18386 ACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGA 18445 || | |||||||||||||||||| ||||| ||||| || ||||||| Sbjct 3121828 ACCAGCACAAGTACGGCATCAAGGCCAGCAGCGGCGGCGGCCGCAGCAGCGCGCGCGAGA 3121887 Query 18446 CCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || | |||||| |||||||| || || |||||||| Sbjct 3121888 CCATTGCGCGCGTGGCCGCCGGTGCCGTGGCCGAGAA 3121924 Score = 134 bits (148), Expect = 2e-25 Identities = 119/146 (82%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 19048 ACAGCATCGGCGGCACGGTGACGTGCGT-GTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||| ||||||||| || || ||||| ||| |||||||||||||| |||||||||||| Sbjct 3122161 ACAGCACCGGCGGCACCGTCACCTGCGTCGTG-CGCAACGTGCCGGCCGGCCTCGGCGAG 3122219 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || |||||||||||| |||||| |||||||| ||||||||| ||||| ||| | Sbjct 3122220 CCTACCTTTGACAAGATGGAGGCCAAACTCGCCCATGCCATGCTGAGCATCCCCGCCGTC 3122279 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| |||||||| ||| ||| || Sbjct 3122280 AAGGCGTTCGAGATCGGCTCCGGCTT 3122305 >seq2 Length=2210479 Score = 158 bits (174), Expect = 1e-32 Identities = 304/450 (68%), Gaps = 15/450 (3%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| || ||||| || |||| ||| || ||||| |||||||| | || || || Sbjct 1077387 GCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATT 1077328 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 |||| ||| ||||| || || | || | |||| || || | ||| | | Sbjct 1077327 GGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACATTGAG 1077268 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || ||||| || ||| ||||||||| | ||||| ||||| ||||| ||||| || Sbjct 1077267 ACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACC 1077208 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| || ||| |||||||||| || || |||||||||||| || | |||| || Sbjct 1077207 CTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGT 1077148 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||||||||||| ||||| | || |||||| |||| | ||||| || ||| Sbjct 1077147 ACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTA 1077088 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| ||| || ||| || |||| | | || || ||| | || Sbjct 1077087 GGTCTCGATGACACGC------------TCGACGTTGTC---TCCCCAGATGCCAACAGC 1077043 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 || ||||||| ||||| |||||| |||||||| | |||| | |||| |||||| Sbjct 1077042 AACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAGGTA 1076983 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTA 1630511 ||||| | |||| ||| ||||||||| Sbjct 1076982 AGACCGCTCTAGGGTCTTGAAGCCAAAGTA 1076953 Score = 111 bits (122), Expect = 2e-18 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846 ||||||||| ||||| ||||| | |||| || ||| || ||||| ||| | | Sbjct 1078135 CGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGG 1078076 Query 1627847 GCAGGTCCAT--CATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCG 1627904 ||| | || | || || || ||||| || ||||| || || || || || || || Sbjct 1078075 GCATGCGCAGAGCGAGGAAAGCA--TCGGCAAGACCCTGAACACCAACACCGATGGGGCG 1078018 Query 1627905 GTGGCGCAGGTTCGAGTGGCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCG 1627964 |||||||| ||| || ||| ||||||||||| ||||||||||||| || || | ||| Sbjct 1078017 GTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCG 1077958 Query 1627965 GTTGAGGTTGCCCACCACGACCTGGACGATCTCGTGCAG 1628003 ||| ||||||| || || ||| | || ||||||||| Sbjct 1077957 GTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAG 1077919 Score = 96.9 bits (106), Expect = 4e-14 Identities = 280/436 (64%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 1628169 GATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||| ||||||||||||| | || | ||||||||||||| ||||||| | | Sbjct 1077816 GATCTCTGTGCACAGGTTGGAGCTGCGAA-TGGTACCCAGGTTCTTCTGGTTGCTCTTGC 1077758 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 ||||| | |||||||| |||||| |||| |||||||||| |||| ||| ||| || Sbjct 1077757 GGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGA 1077698 Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGACAGTC---CGCGCGCGGCCCTNNNNNNNNN 1628344 |||| |||| | || | || | || ||| || |||| |||| Sbjct 1077697 TGGCGTACCACAGCTTCTGAGC---CTTGATGGTCTTGCGACCGCGACCCTCAGCCTCGT 1077641 Query 1628345 NNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGG 1628404 || || || |||||||||| ||| || ||||| |||| Sbjct 1077640 ACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGT 1077581 Query 1628405 ACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACG 1628464 || || | || | ||| ||| | || | | || ||| ||||| || Sbjct 1077580 TGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGA 1077521 Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 ||||||| || || | || | || ||| ||||||||| || || ||||| | Sbjct 1077520 TCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCA 1077461 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 | || | | |||| | |||||||||||||||||| |||||| |||||||||||| Sbjct 1077460 GATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGG 1077401 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| |||||| Sbjct 1077400 GGCGCTTGTTGCCGCC 1077385 >seq9 Length=477563 Score = 149 bits (164), Expect = 8e-30 Identities = 231/323 (72%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || ||| ||| || |||||||||||||| | |||||||| Sbjct 51400 GCCTTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATG 51459 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| ||||| | | | Sbjct 51460 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCCGAGAGCCACC 51519 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| | Sbjct 51520 AGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGC 51579 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| | | ||||| | ||| || | ||||| ||| |||| Sbjct 51580 AGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCATCGGTGATG 51639 Query 868931 ATCTGCCTGG-GCACGTC--GGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || | |||| ||||| || | || | | |||| | | | | |||||||||| Sbjct 51640 AT-TCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTG---GGAGAAGAGCAGGCA 51695 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 ||| |||||| ||||| ||||| Sbjct 51696 GGCGAAGTCGGTGTGCAGACCCT 51718 Score = 131 bits (144), Expect = 2e-24 Identities = 206/289 (71%), Gaps = 11/289 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||||| |||||| |||| ||||||||||| | ||||||||| Sbjct 51714 ACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTT 51773 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||| ||| ||||| | |||| || ||| ||||||||||||||||||||||| Sbjct 51774 CTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 51833 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT--TG-ATCCACTTCATCGC 869355 | | | || |||| | | || | ||| |||||||| || ||||| || || Sbjct 51834 GGCAACCAGGCGCTGGCCGTAG--GACGA----CTCCTTGTCCTGAATCCAGCGGATGGC 51887 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG-TGGTCCT 869414 |||||||||||| || | | | || | ||||| |||||| |||||| ||| | Sbjct 51888 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAAGGTGCG 51947 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | | || ||||||| |||||||| || || ||||| |||||||| Sbjct 51948 CTGC-GAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTC 51995 Score = 122 bits (134), Expect = 1e-21 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | ||| || Sbjct 51997 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGCACCTGC 52056 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || ||||||||||| || |||||||| |||||||| Sbjct 52057 ACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACGCGGCGAAG 52116 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGG 869809 || || || | |||| ||| ||| |||||||| ||| | | ||| ||||| Sbjct 52117 AAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGTTGTTCCAGTCA 52176 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | | || | ||||| | ||||||||| ||||||| ||||||||| ||||| ||| Sbjct 52177 TGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAGCCTTCTTG 52236 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 52237 TACATCTGCCA 52247 >seq25 Length=4183617 Score = 140 bits (154), Expect = 4e-27 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||||||||| |||||||| || || ||| |||| |||||| |||| |||||| Sbjct 1406456 GCCTCCAACTACCTCGATATCAAGCCCCTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 1406397 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||||||||||| |||||||| || |||||||| ||||||| | ||| Sbjct 1406396 ATGATCAAGGGCAAGTCGCCTGAGGAGATTCGTAAGACCTTCAACATCACGAACG 1406342 >seq3 Length=993733 Score = 102 bits (112), Expect = 1e-15 Identities = 156/217 (72%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 733053 GTCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGC 733112 |||||| | |||||| | ||| | ||| ||| |||||||||| | ||||||||| Sbjct 449469 GTCAAGGTGCAGACGCGGCAGACGCGGCGGCCGGAGCTGGGCGACAAGTTCTCGTCGCGC 449528 Query 733113 CACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC--GAGGACATGCCCTGGTCGC 733170 ||||| || |||||| || |||| | | || ||| |||||| |||| | || | Sbjct 449529 CACGGGCAGAAGGGCGTGGTCGGCATCATTG--TCGACCAGGAGGACCTGCCGT--TCTC 449584 Query 733171 CG-CGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229 || | ||| || |||||||||| | || |||||||||| | |||||||||||||| Sbjct 449585 CGACTCGG--GCATTGTGCCCGACATCATCATGAACCCGCACGGCTTCCCGTCGCGCATG 449642 Query 733230 ACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGG 733266 || | |||||| || ||||| ||| ||||||| Sbjct 449643 ACGGTCGGCAAGCTGATCGAGTGCCTGACCGGCAAGG 449679 >seq1 Length=1101474 Score = 95.1 bits (104), Expect = 1e-13 Identities = 80/96 (83%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGAT-GGCCAGCGGCAGTGCCGACGCCATCTCGCGGTG 1726791 ||||||||||||||||||||||||| || ||| | || ||||||||| ||||||||| Sbjct 786840 CCGTCGGTGCCGTTCTTGAAGCCGACCGGGAAGCTG-AGCCCCGACGCCAGCTCGCGGTG 786782 Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCC 1726827 || ||| |||||||| ||||| || ||||| || || Sbjct 786781 CAGCTGACTCTCGGTAGTGCGAGCTCCCACAGCTCC 786746 Score = 86.0 bits (94), Expect = 8e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACG-TCTGACGAGGC 344240 ||||| ||||| |||||||| || ||||| || ||||||||||| ||| || | ||| Sbjct 770131 GTGGCGTTCCCGACCGAGACGGTGTACGGGCTGGGCGCCGACGCGACGCGCTCGC-CGGC 770073 Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGT 344300 ||||| |||||| | | ||||||||| || || |||||||| | || |||||||| Sbjct 770072 GGTGCGCGGCATCTACGCCGCCAAGGGCCGGCCGTCAGACAACCCGCTGATCGTGCACGT 770013 Query 344301 G 344301 | Sbjct 770012 G 770012 >seq24 Length=4186226 Score = 89.7 bits (98), Expect = 6e-12 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1852174 CTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGC 1852233 ||| |||||||| ||||||||||| | ||||||||||||| ||||||||| || | Sbjct 3168134 CTTCCGCTGGTCAACACCGCCAAACTGCACATCGACGTCGAGGTACTGCTCGTCCAGCAC 3168075 Query 1852234 CTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTTGACCACCT 1852292 ||||| | || |||||||| | ||| || | | |||| |||| | |||||| |||| Sbjct 3168074 CTGCAGCACCGAGTAGAGCAGGCCGCTGAGCGGGGCGTTGTCGGT-CTGCTTGACGACCT 3168016 Query 1852293 GAGCGGCGGCCTT 1852305 ||| ||||||| Sbjct 3168015 CGGCGCCGGCCTT 3168003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136820124193