Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq9 172 9e-37
seq26 136 6e-26
seq25 131 3e-24
seq3 120 5e-21
seq2 109 9e-18
seq24 102 1e-15
seq1 98.7 2e-14
>seq9
Length=477563
Score = 172 bits (190), Expect = 9e-37
Identities = 242/332 (73%), Gaps = 11/332 (3%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| || ||||| |||||| ||| ||||||||||| | |||||||||
Sbjct 51714 ACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTT 51773
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||| ||| ||||| | |||| || ||| |||||||||||||||||||||||
Sbjct 51774 CTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 51833
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT--TGA-TCCACTTCATCGC 794516
| | || || |||| ||| || | | | ||| |||| ||| |||| || ||
Sbjct 51834 GGCAACCAGGCGCT-GGCCGTAG-GACGA----CTCCTTGTCCTGAATCCAGCGGATGGC 51887
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575
||| || ||||| || | | |||| | ||||| |||||| |||||| ||| |
Sbjct 51888 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAAGGTGCG 51947
Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635
||| || ||||||| ||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 51948 CTGCGAG-GGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTCGGAGTGGATGT 52006
Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
| || || |||||||||||| || ||||||
Sbjct 52007 TCTCCATCATGATCTGGAAGCCGTAGAAGCAG 52038
Score = 149 bits (164), Expect = 1e-29
Identities = 183/250 (73%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| || ||| ||| || |||||||||||||| | |
Sbjct 51392 TGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 51451
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||| ||||||| | | |||| ||| ||| ||||
Sbjct 51452 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCCGA 51511
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | | |||||||||||||||||||| || |||||||| ||| |||| ||||||||
Sbjct 51512 GAGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCA 51571
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || |||||| | |||| ||| ||||| | ||| || | ||||| |
Sbjct 51572 TGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCAT 51631
Query 794131 CGATGATGAT 794140
|| |||||||
Sbjct 51632 CGGTGATGAT 51641
>seq26
Length=2648925
Score = 136 bits (150), Expect = 6e-26
Identities = 192/268 (72%), Gaps = 5/268 (2%)
Strand=Plus/Minus
Query 2019177 GCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATG 2019231
|||||| ||||||| || ||| || || |||||||||||| ||||||| ||||| |
Sbjct 1029175 GCTTCGCGCAAAAGAAAGTCACCCTACCACCGGGCCGCCACAAGCTGATCATTCTCGACG 1029116
Query 2019232 AGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACA 2019291
| |||||| || | || || | || |||||||| | ||| || ||||||| |||
Sbjct 1029115 AAGCCGACAGCATGACCTCTGGCGCTCAGCAGGCGTTGCGACGCACGATGGAAATCTACT 1029056
Query 2019292 CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCC 2019351
| ||||| ||||| || ||| | ||||||||| ||| | | ||||||| | ||||
Sbjct 1029055 CGAACACCACGCGCTTCGCGTTTGCCTGCAACCAGTCCAACAAGATCATCGAGCCGCTCC 1028996
Query 2019352 AGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTC 2019411
|| || ||||||||| |||| | | || || |||||||| ||| | | ||| |
Sbjct 1028995 AGTCGCGGTGCGCCATCCTGCGGTACTCACGGCTAACCGACGCGCAGGTTGTGAAGCGAC 1028936
Query 2019412 TGCGCGAGATTATCGACGCCGAAAAGGT 2019439
||| |||| ||||| || || |||||
Sbjct 1028935 TGCTGCAGATCATCGAGGCGGAGAAGGT 1028908
Score = 104 bits (114), Expect = 4e-16
Identities = 84/102 (82%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| ||||| |||||||| || ||||||||| |||| ||||| ||| | |
Sbjct 1559591 GTACTTGGTGACAGCCTTAGTACCCTCAGAAACGGCGTGCTTGGCAAGTTCACCGGGAAG 1559532
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT 1485572
|||||||||||| | |||||| ||||| || | || ||| ||
Sbjct 1559531 GATCAGGCGCACAGAGGTCTGAATCTCTCGCGAGCTGATGGT 1559490
>seq25
Length=4183617
Score = 131 bits (144), Expect = 3e-24
Identities = 98/115 (85%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| ||||||||||||| |||||||||||||| ||| | || |||||||| || ||||||
Sbjct 1406456 GCCTCCAACTACCTCGATATCAAGCCCCTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 1406397
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||||||||||||||| ||||| || || |||||||| ||||||| | |||
Sbjct 1406396 ATGATCAAGGGCAAGTCGCCTGAGGAGATTCGTAAGACCTTCAACATCACGAACG 1406342
Score = 89.7 bits (98), Expect = 8e-12
Identities = 127/174 (73%), Gaps = 5/174 (3%)
Strand=Plus/Minus
Query 653657 GGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACC-GTGGGCAGCGTGCGCTCGAC 653715
|| |||||| | |||||||||||||| || ||||| || |||||| || || |
Sbjct 3679191 GGTGACAAATTCTCGTCGCGCCACGGCCAGAAGGGTGTGTGTTCGCAGCGGTGGC-CGTC 3679133
Query 653716 CGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCA 653775
| || ||||||| || ||| | ||| || |||||| || |||||||||||||
Sbjct 3679132 GGTTGACATGCCGT--TCACCGAGTCGGGCATGCA-GCCCGATGTCATCATCAACCCGCA 3679076
Query 653776 CGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAA 653829
|||| |||||||||| |||||||| |||| | | ||||| | || ||||||
Sbjct 3679075 CGCCTTCCCGTCGCGGATGACCATCGGCATGTTCGTGGAGTCGCTGGCGGGCAA 3679022
>seq3
Length=993733
Score = 120 bits (132), Expect = 5e-21
Identities = 336/511 (66%), Gaps = 33/511 (6%)
Strand=Plus/Plus
Query 653641 GCGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG 653700
||| | ||| ||| |||||||||| | ||||||||||||||||| |||||| || ||
Sbjct 449492 GCGGCGGCCGGAGCTGGGCGACAAGTTCTCGTCGCGCCACGGGCAGAAGGGCGTGGTCGG 449551
Query 653701 CAGCGTGCGCTCGACC--GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGAC 653758
|| | | |||||| ||||| |||||| || ||| | |||| |||||||
Sbjct 449552 CATCATTG--TCGACCAGGAGGACCTGCCGT--TCTCCGA-CTCGGGCATTGTGCCCGAC 449606
Query 653759 ATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCC 653818
||| |||| |||||||||| | |||||||||||||||| | |||||| |||| ||| |
Sbjct 449607 ATCATCATGAACCCGCACGGCTTCCCGTCGCGCATGACGGTCGGCAAGCTGATCGAGTGC 449666
Query 653819 CTCCTGGGCAAGG---------TGGCCTGCCGCGAGGGCTACG---TGGGCGACGGCACC 653866
|| ||||||| ||| | | ||| ||| ||||| | |||||||
Sbjct 449667 CTGACCGGCAAGGCGTCGGTGCTGGACGGGCGCAAGGACTACGGCTTTGGCGACG----- 449721
Query 653867 CCGTTTGGCGGCGTCACC--GTNNNNNNNNNNNNNNNNNAGTTGGCCCGCCACGGGTGCG 653924
|||| ||| |||| || | ||| ||||| | |
Sbjct 449722 -CGTT--CCGGTCGCACCCGGTCGAGGAGATGGGGCGGGTGCTGGTGGCGCACGGCTTCT 449778
Query 653925 AGCGCTACGGCAAGGAGGTGCTCTACCACCCGCA-CACGGGCGAGCCCATGGAGGCGTTG 653983
| | | |||||||| | || || | | | ||| |||||||| |||||||||
Sbjct 449779 CGTGGGAGGGCAAGGA-CTACTTCACGTCGGGGATCACCGGCGAGCCGCTGGAGGCGTAC 449837
Query 653984 ATCTTTTCGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCAC 654043
|||| | |||| ||||||||||| ||| ||| ||| |||||||| |||
Sbjct 449838 ATCTACAACGGGCCGATCTACTACCAGCGGCTGAAGCACATGGTGCAGGACAAGATGCAC 449897
Query 654044 GCCCGGCCGCGCGGCCCCGTGC-AGATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCG 654102
| ||| || ||| |||| || || || || |||||| ||||||||||||||
Sbjct 449898 TCGCGGTCG-ACGGGCCCGCGCGCGAGCCTGACGCGCCAGCCGACGGAGGGCCGGTCGCG 449956
Query 654103 CTCGGGCGGCTTTCGCCTCGGAGAGATGGAG 654133
| ||||||| | || || || |||||||||
Sbjct 449957 CGAGGGCGGCCTGCGGCTGGGCGAGATGGAG 449987
>seq2
Length=2210479
Score = 109 bits (120), Expect = 9e-18
Identities = 287/438 (66%), Gaps = 12/438 (3%)
Strand=Plus/Minus
Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638
|| ||| ||||||||||||| | || |||| |||||||||| ||||||||| |
Sbjct 1077816 GATCTCTGTGCACAGGTTGGAG--CTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTG 1077759
Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698
||||| | |||||||| ||||||| |||| || |||||| |||| ||| || |
Sbjct 1077758 CGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGG 1077699
Query 2071699 ATGGCCGACCAAATTTGGCGCGCGGGCACCGA-GGTCCT-CG--CGCGGCCCTNNNNNNN 2071754
||||| |||| | || | || || |||| | || |||| ||||
Sbjct 1077698 ATGGCGTACCACA----GCTTCTGAGCCTTGATGGTCTTGCGACCGCGACCCTCAGCCTC 1077643
Query 2071755 NNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTC 2071814
| ||||| || || | |||||| ||| ||| || ||||| |||
Sbjct 1077642 GTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTC 1077583
Query 2071815 GGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCA 2071874
| ||||| | || | ||| ||| || || | || || ||| || || |||
Sbjct 1077582 GTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGG 1077523
Query 2071875 CGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 2071934
||||||| | || | ||| | || ||| ||||||||| || || |||||
Sbjct 1077522 GATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCG 1077463
Query 2071935 CAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994
||| || | | |||| | |||||||||||||||||| |||||| ||||||||||||
Sbjct 1077462 CAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCC 1077403
Query 2071995 CTTGCGCTTGCCGCCGCC 2072012
||||||| ||||||
Sbjct 1077402 GGGGCGCTTGTTGCCGCC 1077385
Score = 102 bits (112), Expect = 1e-15
Identities = 177/254 (70%), Gaps = 5/254 (2%)
Strand=Plus/Minus
Query 2069991 GCCCTCATAGTAGGACGGATAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGC 2070050
|||||||||| ||| |||| |||||||| ||| | | |||| |||| |
Sbjct 1078197 GCCCTCATAGGTGGAG---TAGGTTCCCTCCTCCTTGGCGATCTCCACCGAGGCCGACAG 1078141
Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCT 2070109
|| || |||||||| ||||| ||||| ||| |||| || || || ||||| ||
Sbjct 1078140 AGCAGCGTGGTAGATGGTCTCGAAGATC-TGCTGGTTCAGCTCCCGAGCCTCGGCGGACT 1078082
Query 2070110 CCCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCG 2070169
| | |||| | || | || || ||||| || ||||| || || || || || |
Sbjct 1078081 CAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGAACACCAACACCGATGG 1078022
Query 2070170 GCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCA 2070229
| |||||||||| ||| || || ||||||||||| ||||||||||||| || || |
Sbjct 1078021 GGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGA 1077962
Query 2070230 CGCGGTTGAGGTTG 2070243
|||||| ||||||
Sbjct 1077961 TGCGGTTCAGGTTG 1077948
>seq24
Length=4186226
Score = 102 bits (112), Expect = 1e-15
Identities = 104/133 (78%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 2411517 CTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGC 2411576
||| |||||||| ||||||||||| | ||||||||||||| ||||||||| || |
Sbjct 3168134 CTTCCGCTGGTCAACACCGCCAAACTGCACATCGACGTCGAGGTACTGCTCGTCCAGCAC 3168075
Query 2411577 CTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCT 2411635
||||| | || ||||| ||| ||||||||| | |||| |||| | |||||| ||||
Sbjct 3168074 CTGCAGCACCGAGTAGAGCAGGCCGCTGAGCGGGGCGTTGTCGGT-CTGCTTGACGACCT 3168016
Query 2411636 GGGCGGCGGCCTT 2411648
|||| |||||||
Sbjct 3168015 CGGCGCCGGCCTT 3168003
>seq1
Length=1101474
Score = 98.7 bits (108), Expect = 2e-14
Identities = 104/135 (77%), Gaps = 9/135 (7%)
Strand=Plus/Minus
Query 2175047 GCGCACGGCATCGA--GCGCCGTTG-CCACGCTG------CCGTCGGTGCCGTTTTTAAA 2175097
|||||| ||| ||| ||| || || |||||||| |||||||||||||| || ||
Sbjct 786880 GCGCACAGCACCGATGGCGTCGATGGCCACGCTGAGCGAGCCGTCGGTGCCGTTCTTGAA 786821
Query 2175098 CCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCG 2175157
|||||||| || ||| ||||||||| |||||||||| ||| |||||||| |||||
Sbjct 786820 GCCGACCGGGAAGCTGAGCCCCGACGCCAGCTCGCGGTGCAGCTGACTCTCGGTAGTGCG 786761
Query 2175158 CGCGCCCACGGCGCC 2175172
|| ||||| || ||
Sbjct 786760 AGCTCCCACAGCTCC 786746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243315137731
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