Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 172 9e-37 seq26 136 6e-26 seq25 131 3e-24 seq3 120 5e-21 seq2 109 9e-18 seq24 102 1e-15 seq1 98.7 2e-14 >seq9 Length=477563 Score = 172 bits (190), Expect = 9e-37 Identities = 242/332 (73%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||||| |||||| ||| ||||||||||| | ||||||||| Sbjct 51714 ACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTT 51773 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||| ||| ||||| | |||| || ||| ||||||||||||||||||||||| Sbjct 51774 CTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 51833 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT--TGA-TCCACTTCATCGC 794516 | | || || |||| ||| || | | | ||| |||| ||| |||| || || Sbjct 51834 GGCAACCAGGCGCT-GGCCGTAG-GACGA----CTCCTTGTCCTGAATCCAGCGGATGGC 51887 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | |||| | ||||| |||||| |||||| ||| | Sbjct 51888 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAAGGTGCG 51947 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 ||| || ||||||| ||||||||| ||||| |||||||||||||| |||||||||| Sbjct 51948 CTGCGAG-GGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTCGGAGTGGATGT 52006 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || || |||||||||||| || |||||| Sbjct 52007 TCTCCATCATGATCTGGAAGCCGTAGAAGCAG 52038 Score = 149 bits (164), Expect = 1e-29 Identities = 183/250 (73%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| || ||| ||| || |||||||||||||| | | Sbjct 51392 TGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 51451 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| | | |||| ||| ||| |||| Sbjct 51452 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCCGA 51511 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | |||||||||||||||||||| || |||||||| ||| |||| |||||||| Sbjct 51512 GAGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCA 51571 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || |||||| | |||| ||| ||||| | ||| || | ||||| | Sbjct 51572 TGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCAT 51631 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 51632 CGGTGATGAT 51641 >seq26 Length=2648925 Score = 136 bits (150), Expect = 6e-26 Identities = 192/268 (72%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 2019177 GCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATG 2019231 |||||| ||||||| || ||| || || |||||||||||| ||||||| ||||| | Sbjct 1029175 GCTTCGCGCAAAAGAAAGTCACCCTACCACCGGGCCGCCACAAGCTGATCATTCTCGACG 1029116 Query 2019232 AGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACA 2019291 | |||||| || | || || | || |||||||| | ||| || ||||||| ||| Sbjct 1029115 AAGCCGACAGCATGACCTCTGGCGCTCAGCAGGCGTTGCGACGCACGATGGAAATCTACT 1029056 Query 2019292 CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCC 2019351 | ||||| ||||| || ||| | ||||||||| ||| | | ||||||| | |||| Sbjct 1029055 CGAACACCACGCGCTTCGCGTTTGCCTGCAACCAGTCCAACAAGATCATCGAGCCGCTCC 1028996 Query 2019352 AGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTC 2019411 || || ||||||||| |||| | | || || |||||||| ||| | | ||| | Sbjct 1028995 AGTCGCGGTGCGCCATCCTGCGGTACTCACGGCTAACCGACGCGCAGGTTGTGAAGCGAC 1028936 Query 2019412 TGCGCGAGATTATCGACGCCGAAAAGGT 2019439 ||| |||| ||||| || || ||||| Sbjct 1028935 TGCTGCAGATCATCGAGGCGGAGAAGGT 1028908 Score = 104 bits (114), Expect = 4e-16 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| ||||| |||||||| || ||||||||| |||| ||||| ||| | | Sbjct 1559591 GTACTTGGTGACAGCCTTAGTACCCTCAGAAACGGCGTGCTTGGCAAGTTCACCGGGAAG 1559532 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT 1485572 |||||||||||| | |||||| ||||| || | || ||| || Sbjct 1559531 GATCAGGCGCACAGAGGTCTGAATCTCTCGCGAGCTGATGGT 1559490 >seq25 Length=4183617 Score = 131 bits (144), Expect = 3e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||||||||| |||||||||||||| ||| | || |||||||| || |||||| Sbjct 1406456 GCCTCCAACTACCTCGATATCAAGCCCCTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 1406397 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||||||||||||||| ||||| || || |||||||| ||||||| | ||| Sbjct 1406396 ATGATCAAGGGCAAGTCGCCTGAGGAGATTCGTAAGACCTTCAACATCACGAACG 1406342 Score = 89.7 bits (98), Expect = 8e-12 Identities = 127/174 (73%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 653657 GGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACC-GTGGGCAGCGTGCGCTCGAC 653715 || |||||| | |||||||||||||| || ||||| || |||||| || || | Sbjct 3679191 GGTGACAAATTCTCGTCGCGCCACGGCCAGAAGGGTGTGTGTTCGCAGCGGTGGC-CGTC 3679133 Query 653716 CGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCA 653775 | || ||||||| || ||| | ||| || |||||| || ||||||||||||| Sbjct 3679132 GGTTGACATGCCGT--TCACCGAGTCGGGCATGCA-GCCCGATGTCATCATCAACCCGCA 3679076 Query 653776 CGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAA 653829 |||| |||||||||| |||||||| |||| | | ||||| | || |||||| Sbjct 3679075 CGCCTTCCCGTCGCGGATGACCATCGGCATGTTCGTGGAGTCGCTGGCGGGCAA 3679022 >seq3 Length=993733 Score = 120 bits (132), Expect = 5e-21 Identities = 336/511 (66%), Gaps = 33/511 (6%) Strand=Plus/Plus Query 653641 GCGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG 653700 ||| | ||| ||| |||||||||| | ||||||||||||||||| |||||| || || Sbjct 449492 GCGGCGGCCGGAGCTGGGCGACAAGTTCTCGTCGCGCCACGGGCAGAAGGGCGTGGTCGG 449551 Query 653701 CAGCGTGCGCTCGACC--GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGAC 653758 || | | |||||| ||||| |||||| || ||| | |||| ||||||| Sbjct 449552 CATCATTG--TCGACCAGGAGGACCTGCCGT--TCTCCGA-CTCGGGCATTGTGCCCGAC 449606 Query 653759 ATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCC 653818 ||| |||| |||||||||| | |||||||||||||||| | |||||| |||| ||| | Sbjct 449607 ATCATCATGAACCCGCACGGCTTCCCGTCGCGCATGACGGTCGGCAAGCTGATCGAGTGC 449666 Query 653819 CTCCTGGGCAAGG---------TGGCCTGCCGCGAGGGCTACG---TGGGCGACGGCACC 653866 || ||||||| ||| | | ||| ||| ||||| | ||||||| Sbjct 449667 CTGACCGGCAAGGCGTCGGTGCTGGACGGGCGCAAGGACTACGGCTTTGGCGACG----- 449721 Query 653867 CCGTTTGGCGGCGTCACC--GTNNNNNNNNNNNNNNNNNAGTTGGCCCGCCACGGGTGCG 653924 |||| ||| |||| || | ||| ||||| | | Sbjct 449722 -CGTT--CCGGTCGCACCCGGTCGAGGAGATGGGGCGGGTGCTGGTGGCGCACGGCTTCT 449778 Query 653925 AGCGCTACGGCAAGGAGGTGCTCTACCACCCGCA-CACGGGCGAGCCCATGGAGGCGTTG 653983 | | | |||||||| | || || | | | ||| |||||||| ||||||||| Sbjct 449779 CGTGGGAGGGCAAGGA-CTACTTCACGTCGGGGATCACCGGCGAGCCGCTGGAGGCGTAC 449837 Query 653984 ATCTTTTCGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCAC 654043 |||| | |||| ||||||||||| ||| ||| ||| |||||||| ||| Sbjct 449838 ATCTACAACGGGCCGATCTACTACCAGCGGCTGAAGCACATGGTGCAGGACAAGATGCAC 449897 Query 654044 GCCCGGCCGCGCGGCCCCGTGC-AGATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCG 654102 | ||| || ||| |||| || || || || |||||| |||||||||||||| Sbjct 449898 TCGCGGTCG-ACGGGCCCGCGCGCGAGCCTGACGCGCCAGCCGACGGAGGGCCGGTCGCG 449956 Query 654103 CTCGGGCGGCTTTCGCCTCGGAGAGATGGAG 654133 | ||||||| | || || || ||||||||| Sbjct 449957 CGAGGGCGGCCTGCGGCTGGGCGAGATGGAG 449987 >seq2 Length=2210479 Score = 109 bits (120), Expect = 9e-18 Identities = 287/438 (66%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 || ||| ||||||||||||| | || |||| |||||||||| ||||||||| | Sbjct 1077816 GATCTCTGTGCACAGGTTGGAG--CTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTG 1077759 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 ||||| | |||||||| ||||||| |||| || |||||| |||| ||| || | Sbjct 1077758 CGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGG 1077699 Query 2071699 ATGGCCGACCAAATTTGGCGCGCGGGCACCGA-GGTCCT-CG--CGCGGCCCTNNNNNNN 2071754 ||||| |||| | || | || || |||| | || |||| |||| Sbjct 1077698 ATGGCGTACCACA----GCTTCTGAGCCTTGATGGTCTTGCGACCGCGACCCTCAGCCTC 1077643 Query 2071755 NNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTC 2071814 | ||||| || || | |||||| ||| ||| || ||||| ||| Sbjct 1077642 GTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTC 1077583 Query 2071815 GGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCA 2071874 | ||||| | || | ||| ||| || || | || || ||| || || ||| Sbjct 1077582 GTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGG 1077523 Query 2071875 CGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 2071934 ||||||| | || | ||| | || ||| ||||||||| || || ||||| Sbjct 1077522 GATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCG 1077463 Query 2071935 CAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 ||| || | | |||| | |||||||||||||||||| |||||| |||||||||||| Sbjct 1077462 CAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCC 1077403 Query 2071995 CTTGCGCTTGCCGCCGCC 2072012 ||||||| |||||| Sbjct 1077402 GGGGCGCTTGTTGCCGCC 1077385 Score = 102 bits (112), Expect = 1e-15 Identities = 177/254 (70%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 2069991 GCCCTCATAGTAGGACGGATAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGC 2070050 |||||||||| ||| |||| |||||||| ||| | | |||| |||| | Sbjct 1078197 GCCCTCATAGGTGGAG---TAGGTTCCCTCCTCCTTGGCGATCTCCACCGAGGCCGACAG 1078141 Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCT 2070109 || || |||||||| ||||| ||||| ||| |||| || || || ||||| || Sbjct 1078140 AGCAGCGTGGTAGATGGTCTCGAAGATC-TGCTGGTTCAGCTCCCGAGCCTCGGCGGACT 1078082 Query 2070110 CCCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCG 2070169 | | |||| | || | || || ||||| || ||||| || || || || || | Sbjct 1078081 CAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGAACACCAACACCGATGG 1078022 Query 2070170 GCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCA 2070229 | |||||||||| ||| || || ||||||||||| ||||||||||||| || || | Sbjct 1078021 GGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGA 1077962 Query 2070230 CGCGGTTGAGGTTG 2070243 |||||| |||||| Sbjct 1077961 TGCGGTTCAGGTTG 1077948 >seq24 Length=4186226 Score = 102 bits (112), Expect = 1e-15 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 2411517 CTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGC 2411576 ||| |||||||| ||||||||||| | ||||||||||||| ||||||||| || | Sbjct 3168134 CTTCCGCTGGTCAACACCGCCAAACTGCACATCGACGTCGAGGTACTGCTCGTCCAGCAC 3168075 Query 2411577 CTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCT 2411635 ||||| | || ||||| ||| ||||||||| | |||| |||| | |||||| |||| Sbjct 3168074 CTGCAGCACCGAGTAGAGCAGGCCGCTGAGCGGGGCGTTGTCGGT-CTGCTTGACGACCT 3168016 Query 2411636 GGGCGGCGGCCTT 2411648 |||| ||||||| Sbjct 3168015 CGGCGCCGGCCTT 3168003 >seq1 Length=1101474 Score = 98.7 bits (108), Expect = 2e-14 Identities = 104/135 (77%), Gaps = 9/135 (7%) Strand=Plus/Minus Query 2175047 GCGCACGGCATCGA--GCGCCGTTG-CCACGCTG------CCGTCGGTGCCGTTTTTAAA 2175097 |||||| ||| ||| ||| || || |||||||| |||||||||||||| || || Sbjct 786880 GCGCACAGCACCGATGGCGTCGATGGCCACGCTGAGCGAGCCGTCGGTGCCGTTCTTGAA 786821 Query 2175098 CCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCG 2175157 |||||||| || ||| ||||||||| |||||||||| ||| |||||||| ||||| Sbjct 786820 GCCGACCGGGAAGCTGAGCCCCGACGCCAGCTCGCGGTGCAGCTGACTCTCGGTAGTGCG 786761 Query 2175158 CGCGCCCACGGCGCC 2175172 || ||||| || || Sbjct 786760 AGCTCCCACAGCTCC 786746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243315137731