Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 172 5e-38 >seq2 Length=2210479 Score = 172 bits (190), Expect = 5e-38 Identities = 723/1119 (65%), Gaps = 47/1119 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 |||||||| || ||||| || || |||||||| | | || | |||| ||| | ||| Sbjct 1078436 TTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGC 1078377 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| |||| || ||||| | || || | || | || || |||||| |||| | Sbjct 1078376 TCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGC 1078317 Query 147013 AACAATGAATTTCGCAGACCGT-ACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 | || || || | ||||| | || | || | ||||||| | | ||||||||| Sbjct 1078316 AGCAGACTGTTGCGAACACCGTGAAGCTTG-ATCTGCTCCTTCAGGCTATCCCAGTCCCA 1078258 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| | |||| | || ||||||||||| |||| || | || || | ||||| Sbjct 1078257 GAGGTCG--GTGGGCTTGACATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGA 1078200 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAGCTTGCCTCGAG 147188 ||| | | || | |||| |||| || || || | | ||| | ||| || Sbjct 1078199 GAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACCG-AGGCCGACAG 1078141 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||| || | ||| || | || || || ||| Sbjct 1078140 AGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTC 1078081 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||||| |||||| | || |||||||| | |||||| | ||| || ||||| || Sbjct 1078080 AAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGAACACCAACACCGATGGG 1078021 Query 147309 TCGAT---GCTTTTCGTTGCTGC--GCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 || | || | | | || ||| || ||| || | ||| ||||||||| |||| Sbjct 1078020 GCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGC-----ACGGGGTAGTGGTTGACATCA 1077966 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 || || ||| ||||| || || || || | || | | || ||||| || ||| Sbjct 1077965 ATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCA 1077906 Query 147424 TA-AGTCCCGTCTTCGA---CACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCA 147479 || | ||| | || | ||||| || | || |||| || ||||| ||||| Sbjct 1077905 TACACGCCCTTGTTGTAGTCAACGTAGGC----GGGCAGAGCGAGGGAGGCCAGGTTGCA 1077850 Query 147480 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 || ||| ||| |||| ||| ||||| | ||| || | |||||||||| || Sbjct 1077849 CACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCACAGGTTGGAGCTGCG 1077790 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 ||| |||| || | ||| ||||| || || ||||| ||| ||| | |||||| | Sbjct 1077789 AATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAA 1077730 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCA 147658 || |||||||||| || | || | ||| | || ||| | ||| || | Sbjct 1077729 GGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAT-GGCGTACCACAGCTTCTGAGCCTTGA 1077671 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 || ||| ||| ||||| |||||| |||||||| ||| ||||| |||| Sbjct 1077670 TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGC 1077611 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 ||||||| |||||||| ||||| |||| | || |||||||| | |||| | ||| | Sbjct 1077610 CGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCT 1077551 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC---GTACATAAGATCGCGCG 147835 | || || ||| || ||||| || | |||||| || | ||| || || ||| Sbjct 1077550 TCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACA-AATCTCTGGCG 1077492 Query 147836 CTTTGCAATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTC 147890 | | ||||| ||||| ||||| || || | | || | | | | ||| Sbjct 1077491 C--GGACCTCCTC-CTTTCCATGATTCTTGCG---CAGATCCATGAACTCGA-ACACGTC 1077439 Query 147891 GGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTC 147947 ||||||||| || || | ||||| ||| | || || ||| || ||||||||||| Sbjct 1077438 GGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTC 1077379 Query 147948 GACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986 |||| ||| | ||||||| |||||||| | |||||| Sbjct 1077378 AACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGG 1077340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611027228440