Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 5e-38
>seq2
Length=2210479
Score = 172 bits (190), Expect = 5e-38
Identities = 723/1119 (65%), Gaps = 47/1119 (4%)
Strand=Plus/Minus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
|||||||| || ||||| || || |||||||| | | || | |||| ||| | |||
Sbjct 1078436 TTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGC 1078377
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
||||| |||| || ||||| | || || | || | || || |||||| |||| |
Sbjct 1078376 TCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGC 1078317
Query 147013 AACAATGAATTTCGCAGACCGT-ACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071
| || || || | ||||| | || | || | ||||||| | | |||||||||
Sbjct 1078316 AGCAGACTGTTGCGAACACCGTGAAGCTTG-ATCTGCTCCTTCAGGCTATCCCAGTCCCA 1078258
Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129
| ||| | |||| | || ||||||||||| |||| || | || || | |||||
Sbjct 1078257 GAGGTCG--GTGGGCTTGACATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGA 1078200
Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAGCTTGCCTCGAG 147188
||| | | || | |||| |||| || || || | | ||| | ||| ||
Sbjct 1078199 GAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACCG-AGGCCGACAG 1078141
Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248
|| | | ||| ||||| ||| ||| || | ||| || | || || || |||
Sbjct 1078140 AGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTC 1078081
Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308
| ||||| |||||| | || |||||||| | |||||| | ||| || ||||| ||
Sbjct 1078080 AAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGAACACCAACACCGATGGG 1078021
Query 147309 TCGAT---GCTTTTCGTTGCTGC--GCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363
|| | || | | | || ||| || ||| || | ||| ||||||||| ||||
Sbjct 1078020 GCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGC-----ACGGGGTAGTGGTTGACATCA 1077966
Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423
|| || ||| ||||| || || || || | || | | || ||||| || |||
Sbjct 1077965 ATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCA 1077906
Query 147424 TA-AGTCCCGTCTTCGA---CACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCA 147479
|| | ||| | || | ||||| || | || |||| || ||||| |||||
Sbjct 1077905 TACACGCCCTTGTTGTAGTCAACGTAGGC----GGGCAGAGCGAGGGAGGCCAGGTTGCA 1077850
Query 147480 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539
|| ||| ||| |||| ||| ||||| | ||| || | |||||||||| ||
Sbjct 1077849 CACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCACAGGTTGGAGCTGCG 1077790
Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599
||| |||| || | ||| ||||| || || ||||| ||| ||| | |||||| |
Sbjct 1077789 AATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAA 1077730
Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCA 147658
|| |||||||||| || | || | ||| | || ||| | ||| || |
Sbjct 1077729 GGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAT-GGCGTACCACAGCTTCTGAGCCTTGA 1077671
Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718
|| ||| ||| ||||| |||||| |||||||| ||| ||||| ||||
Sbjct 1077670 TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGC 1077611
Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778
||||||| |||||||| ||||| |||| | || |||||||| | |||| | ||| |
Sbjct 1077610 CGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCT 1077551
Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC---GTACATAAGATCGCGCG 147835
| || || ||| || ||||| || | |||||| || | ||| || || |||
Sbjct 1077550 TCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACA-AATCTCTGGCG 1077492
Query 147836 CTTTGCAATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTC 147890
| | ||||| ||||| ||||| || || | | || | | | | |||
Sbjct 1077491 C--GGACCTCCTC-CTTTCCATGATTCTTGCG---CAGATCCATGAACTCGA-ACACGTC 1077439
Query 147891 GGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTC 147947
||||||||| || || | ||||| ||| | || || ||| || |||||||||||
Sbjct 1077438 GGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTC 1077379
Query 147948 GACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986
|||| ||| | ||||||| |||||||| | ||||||
Sbjct 1077378 AACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGG 1077340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611027228440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |