Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9 214 3e-49 seq2 156 6e-32 seq3 122 1e-21 seq1 93.3 6e-13 seq26 87.8 3e-11 seq12 86.0 9e-11 >seq9 Length=477563 Score = 214 bits (236), Expect = 3e-49 Identities = 363/512 (71%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||| ||||||||| |||||| Sbjct 52251 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACC 52193 Query 1455835 TCGGCGCCGACACGGTCCA---CTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCA 1455888 | | || | |||| |||| ||| | | ||| |||||||| |||| Sbjct 52192 TGTCCAAGGATA---TCCATGACTGGAACAACCGCCTAACCGATGACGAGCGTTTCTTCA 52136 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||| | || ||||| || |||||| || ||||| || ||||||||||| | Sbjct 52135 TCTCGCACATTCTTGCCTTCTT-CGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTC 52077 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | ||||| || |||| ||||| || | || ||||| ||||||||| Sbjct 52076 GAGCGTTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATC 52017 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || ||||||||||| || || ||||||||| ||||||| Sbjct 52016 ATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAG 51957 Query 1456069 CCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || ||| | ||| |||||| |||||| ||||| | || | | | || || Sbjct 51956 CC-CTCGCAGCGCACCTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAA 51898 Query 1456128 GGCCGACTGGGCGATGAAGTGGA-TCA--ACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 |||||||||||| || |||| ||| |||||||| ||| | || | | |||| Sbjct 51897 GGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAG----TCGTC-CTACGGCCAGCGC 51843 Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 || || | |||||||| ||||||||||||||| ||| || |||| | ||||| Sbjct 51842 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 51783 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| | |||||||| || Sbjct 51782 TGGATCAAGAAGCGCGGCATGATGCCCGGCCT 51751 Score = 127 bits (140), Expect = 3e-23 Identities = 183/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| ||||| | || ||| | ||||| ||| |||| | ||||| || Sbjct 51641 ATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCC 51582 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||||||||| || ||| |||||||| | | || ||||||||||||| Sbjct 51581 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATCG-AGTTCGTCGCCGACCGCC 51524 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | ||| |||||| | || ||| |||| | | ||||||| ||| | ||| Sbjct 51523 TGCTGGTGGCTCTCGGCAAC-GACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATG 51465 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| |||||||| | |||||||||||||| || ||| || | |||||| ||| Sbjct 51464 GAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTACCAG 51405 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 51404 AAGGCTGGTGTCA 51392 >seq2 Length=2210479 Score = 156 bits (172), Expect = 6e-32 Identities = 340/505 (67%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 || ||||||| || ||| | ||||| | | | ||| ||||| |||| ||||||| Sbjct 1076899 CATAAGGAGGAGCTGGACTCGGCCATTGTCTATGACCGGGACTTCAACTACCAGTACTTT 1076958 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | |||| | ||||| |||||| ||| | || | | |||||||| Sbjct 1076959 GGCTTCAAGACCCTAGAGCGGTCTTACCTGCTCAAGCTTGACGGCAAGATTGTCGAGCGC 1077018 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 |||||| | ||| |||||||||| || ||||| | |||| || ||||| Sbjct 1077019 CCCCAGCACATGATCATGCGTGTTGCTGTTGGCA--TCTGGG------GA----GACAAC 1077066 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920 | | |||| || ||| |||||| | ||||| ||||| ||| |||||| || Sbjct 1077067 G---TCGAGCGTGTCATCGAGACCTACAACTTGATGTC-CAGCAAGTTCTTCACCCATGC 1077122 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 | ||||| ||||| || || || || |||| | ||| ||||||||||| ||| | Sbjct 1077123 CTCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGT 1077182 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 |||||||||| || || ||||| ||||||||||| |||||| ||||| | || Sbjct 1077183 TGACATGAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGAT 1077242 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| ||| || ||||| ||| | | ||| | || || | || | || Sbjct 1077243 CTCCAAGATGGCTGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTCTTA 1077302 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | || || ||||| ||| |||||| || | | |||||||||||||| || ||| | Sbjct 1077303 TATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAA 1077362 Query 260161 CACGGCGCGCTACGTCGACCAGTGC 260185 ||| || ||||| || |||||| || Sbjct 1077363 CACCGCCCGCTATGTTGACCAGGGC 1077387 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| ||| ||| || | ||||||||||| |||| |||| | ||||||||| Sbjct 1077688 TGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGAC 1077747 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214 | ||||| | ||||||||| |||||||||| |||| || ||| ||||||||| Sbjct 1077748 CACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAG-CTCCAACCTGT 1077805 Query 262215 GCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266 |||| |||||| | ||| | | ||| |||| |||||||||||| Sbjct 1077806 GCACAGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCT 1077857 >seq3 Length=993733 Score = 122 bits (134), Expect = 1e-21 Identities = 360/539 (67%), Gaps = 41/539 (8%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| || || || | ||||||| |||||| |||||||| |||||| || Sbjct 449987 CTCCATCTCGCCCAGCCGCAGGCCGCCCTCGCGCGACCGGCCCTCCGTCGGCTGGCGCGT 449928 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGG-GCGTGAATCTTGTCGATGGCCACGTGGCGCA 1600376 || || | ||||| ||| | | | | ||| |||||||| ||| ||| || Sbjct 449927 CAGGCTCGCGCGCGGGCC-CGTCGACCGCGAGTGCATCTTGTCCTGCACCATGTGCTTCA 449869 Query 1600377 GGGCCTGGTAGTAGACCGGCGCCGTAAAGATCAACGCCTCCATGGGCTCGCCGGTG-TGC 1600435 | ||||||||||| |||| | | |||| ||||||||| |||||||||||| | | Sbjct 449868 GCCGCTGGTAGTAGATCGGCCCGTTGTAGATGTACGCCTCCAGCGGCTCGCCGGTGATCC 449809 Query 1600436 GGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTG-GCGAGCCAACTCGGCGGC 1600494 | || || | |||||||| | | | | | ||||| || | ||| | | | || Sbjct 449808 CCGACGTGAAGTAG-TCCTTGCCCTCCCACGAGAAGCCGTGCGCCA-CCAGCAC--CCGC 449753 Query 1600495 GACATCG--TCGAC--GGTGACGCCGCCAAAGGGCGTGCCGTCGCCCA---CATAGCCCT 1600547 |||| ||||| |||| ||| | || ||||||| | | ||| ||| Sbjct 449752 CCCATCTCCTCGACCGGGTGCGACCGGAA-----CG---CGTCGCCAAAGCCGTAGTCCT 449701 Query 1600548 CGCGGCAGGCCA---------CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCA 1600598 ||| | | ||| ||||||| ||| ||| |||| |||||| | |||| Sbjct 449700 TGCGCCCGTCCAGCACCGACGCCTTGCCGGTCAGGCACTCGATCAGCTTGCCGACCGTCA 449641 Query 1600599 TGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGC- 1600657 |||||||||||| | |||||||||| || | ||||||||| || ||| |||| | Sbjct 449640 TGCGCGACGGGAAGCCGTGCGGGTTCATGATGATGTCGGGC---ACAATGCC-CGAGTCG 449585 Query 1600658 GACCAGGGCATGTCCTC--GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGC 1600715 || | |||| |||||| ||| || | | |||| || |||||| || ||||||| Sbjct 449584 GAGAACGGCAGGTCCTCCTGGTCGA--CAATGATGCCGACCACGCCCTTCTGCCCGTGGC 449527 Query 1600716 GCGACGACAGTTTGTCGCCCACCTCGGGCTGGCGCATGGCCCGCGTGACGATCTTGACC 1600774 ||||||| | |||||||||| ||| ||| | ||| | |||||| | ||||||| Sbjct 449526 GCGACGAGAACTTGTCGCCCAGCTCCGGCCGCCGCGTCTGCCGCGTCTGCACCTTGACC 449468 >seq1 Length=1101474 Score = 93.3 bits (102), Expect = 6e-13 Identities = 105/136 (77%), Gaps = 11/136 (8%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 || || || || || ||||| |||||||| ||| ||||||||||| ||||||||| ||| Sbjct 786746 GGAGCTGTGGGAGCTCGCACTACCGAGAGTCAGCTGCACCGCGAGCTGGCGTCGGGGCT- 786804 Query 165828 CCGCTGCCC-ATTGGCTTCAAAAACAGCACCGACGG------CAGCGTGGCGA-CG--GC 165877 | ||| ||| | |||||||| ||| |||||||||| ||||||||| | || || Sbjct 786805 CAGCTTCCCGGTCGGCTTCAAGAACGGCACCGACGGCTCGCTCAGCGTGGCCATCGACGC 786864 Query 165878 CCTCGATGCCGTGCGC 165893 | ||| ||| |||||| Sbjct 786865 CATCGGTGCTGTGCGC 786880 >seq26 Length=2648925 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 332516 CCGCATCCCGTGTGCGTGGCATCAAGGTTGTTGATGGCCTGGCGCATGTCGCCGTCGGCC 332575 ||| |||| | |||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 1028809 CCGAATCCGGCGTGCGTGGACTGCAGGTTGTTGATGGCCTGGCGCATGTCGCCCTCGGCA 1028868 Query 332576 GTGAGCACGATCGCTTCCAGGCCCTCGTCGGTGCACACCAC 332616 ||| ||| | ||| | || || |||||| || || |||| Sbjct 1028869 CTGAACACCAGCGCCGCAAGCCCGTCGTCGCTGTACTCCAC 1028909 >seq12 Length=3629062 Score = 86.0 bits (94), Expect = 9e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| ||||||| |||||||||||| |||| ||||||| ||| |||| || | ||| Sbjct 3038122 GGCGCCATCGGTGCCCGCACCACCGAGTCCCAGCTGCACCGAGAGCTGGCCTCTGGCCTG 3038063 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCC 165887 | | || | |||||||| ||| |||||||||| | | ||| ||| |||||||| Sbjct 3038062 TCTTTCCCTGTCGGCTTCAAGAACGGCACCGACGGTAACCTGGGTGTTGCCATCGATGCC 3038003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808402896698