Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq9 214 3e-49
seq2 156 6e-32
seq3 122 1e-21
seq1 93.3 6e-13
seq26 87.8 3e-11
seq12 86.0 9e-11
>seq9
Length=477563
Score = 214 bits (236), Expect = 3e-49
Identities = 363/512 (71%), Gaps = 22/512 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| |||||||| || ||||| ||||||||| ||||||
Sbjct 52251 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACC 52193
Query 1455835 TCGGCGCCGACACGGTCCA---CTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCA 1455888
| | || | |||| |||| ||| | | ||| |||||||| ||||
Sbjct 52192 TGTCCAAGGATA---TCCATGACTGGAACAACCGCCTAACCGATGACGAGCGTTTCTTCA 52136
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| |||| | || ||||| || |||||| || ||||| || ||||||||||| |
Sbjct 52135 TCTCGCACATTCTTGCCTTCTT-CGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTC 52077
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| || || | ||||| || |||| ||||| || | || ||||| |||||||||
Sbjct 52076 GAGCGTTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATC 52017
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068
|| || ||||||||||| || ||||||||||| || || ||||||||| |||||||
Sbjct 52016 ATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAG 51957
Query 1456069 CCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127
|| ||| | ||| |||||| |||||| ||||| | || | | | || ||
Sbjct 51956 CC-CTCGCAGCGCACCTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAA 51898
Query 1456128 GGCCGACTGGGCGATGAAGTGGA-TCA--ACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184
|||||||||||| || |||| ||| |||||||| ||| | || | | ||||
Sbjct 51897 GGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAG----TCGTC-CTACGGCCAGCGC 51843
Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243
|| || | |||||||| ||||||||||||||| ||| || |||| | |||||
Sbjct 51842 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 51783
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||| | |||||||| ||
Sbjct 51782 TGGATCAAGAAGCGCGGCATGATGCCCGGCCT 51751
Score = 127 bits (140), Expect = 3e-23
Identities = 183/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||| ||||| | || ||| | ||||| ||| |||| | ||||| ||
Sbjct 51641 ATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCC 51582
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||||||||| || ||| |||||||| | | || |||||||||||||
Sbjct 51581 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATCG-AGTTCGTCGCCGACCGCC 51524
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||| | ||| |||||| | || ||| |||| | | ||||||| ||| | |||
Sbjct 51523 TGCTGGTGGCTCTCGGCAAC-GACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATG 51465
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| |||||||| | |||||||||||||| || ||| || | |||||| |||
Sbjct 51464 GAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTACCAG 51405
Query 1456762 AAGGCCGGCGTCA 1456774
||||| || ||||
Sbjct 51404 AAGGCTGGTGTCA 51392
>seq2
Length=2210479
Score = 156 bits (172), Expect = 6e-32
Identities = 340/505 (67%), Gaps = 17/505 (3%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|| ||||||| || ||| | ||||| | | | ||| ||||| |||| |||||||
Sbjct 1076899 CATAAGGAGGAGCTGGACTCGGCCATTGTCTATGACCGGGACTTCAACTACCAGTACTTT 1076958
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801
|| | |||| | ||||| |||||| ||| | || | | ||||||||
Sbjct 1076959 GGCTTCAAGACCCTAGAGCGGTCTTACCTGCTCAAGCTTGACGGCAAGATTGTCGAGCGC 1077018
Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861
|||||| | ||| |||||||||| || ||||| | |||| || |||||
Sbjct 1077019 CCCCAGCACATGATCATGCGTGTTGCTGTTGGCA--TCTGGG------GA----GACAAC 1077066
Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920
| | |||| || ||| |||||| | ||||| ||||| ||| |||||| ||
Sbjct 1077067 G---TCGAGCGTGTCATCGAGACCTACAACTTGATGTC-CAGCAAGTTCTTCACCCATGC 1077122
Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980
| ||||| ||||| || || || || |||| | ||| ||||||||||| ||| |
Sbjct 1077123 CTCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGT 1077182
Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040
|||||||||| || || ||||| ||||||||||| |||||| ||||| | ||
Sbjct 1077183 TGACATGAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGAT 1077242
Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100
||||||| ||| || ||||| ||| | | ||| | || || | || | ||
Sbjct 1077243 CTCCAAGATGGCTGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTCTTA 1077302
Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160
| || || ||||| ||| |||||| || | | |||||||||||||| || ||| |
Sbjct 1077303 TATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAA 1077362
Query 260161 CACGGCGCGCTACGTCGACCAGTGC 260185
||| || ||||| || |||||| ||
Sbjct 1077363 CACCGCCCGCTATGTTGACCAGGGC 1077387
Score = 93.3 bits (102), Expect = 6e-13
Identities = 126/172 (73%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| ||||| ||| ||| || | ||||||||||| |||| |||| | |||||||||
Sbjct 1077688 TGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGAC 1077747
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214
| ||||| | ||||||||| |||||||||| |||| || ||| |||||||||
Sbjct 1077748 CACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAG-CTCCAACCTGT 1077805
Query 262215 GCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266
|||| |||||| | ||| | | ||| |||| ||||||||||||
Sbjct 1077806 GCACAGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCT 1077857
>seq3
Length=993733
Score = 122 bits (134), Expect = 1e-21
Identities = 360/539 (67%), Gaps = 41/539 (8%)
Strand=Plus/Minus
Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317
||||||||| || || || | ||||||| |||||| |||||||| |||||| ||
Sbjct 449987 CTCCATCTCGCCCAGCCGCAGGCCGCCCTCGCGCGACCGGCCCTCCGTCGGCTGGCGCGT 449928
Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGG-GCGTGAATCTTGTCGATGGCCACGTGGCGCA 1600376
|| || | ||||| ||| | | | | ||| |||||||| ||| ||| ||
Sbjct 449927 CAGGCTCGCGCGCGGGCC-CGTCGACCGCGAGTGCATCTTGTCCTGCACCATGTGCTTCA 449869
Query 1600377 GGGCCTGGTAGTAGACCGGCGCCGTAAAGATCAACGCCTCCATGGGCTCGCCGGTG-TGC 1600435
| ||||||||||| |||| | | |||| ||||||||| |||||||||||| | |
Sbjct 449868 GCCGCTGGTAGTAGATCGGCCCGTTGTAGATGTACGCCTCCAGCGGCTCGCCGGTGATCC 449809
Query 1600436 GGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTG-GCGAGCCAACTCGGCGGC 1600494
| || || | |||||||| | | | | | ||||| || | ||| | | | ||
Sbjct 449808 CCGACGTGAAGTAG-TCCTTGCCCTCCCACGAGAAGCCGTGCGCCA-CCAGCAC--CCGC 449753
Query 1600495 GACATCG--TCGAC--GGTGACGCCGCCAAAGGGCGTGCCGTCGCCCA---CATAGCCCT 1600547
|||| ||||| |||| ||| | || ||||||| | | ||| |||
Sbjct 449752 CCCATCTCCTCGACCGGGTGCGACCGGAA-----CG---CGTCGCCAAAGCCGTAGTCCT 449701
Query 1600548 CGCGGCAGGCCA---------CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCA 1600598
||| | | ||| ||||||| ||| ||| |||| |||||| | ||||
Sbjct 449700 TGCGCCCGTCCAGCACCGACGCCTTGCCGGTCAGGCACTCGATCAGCTTGCCGACCGTCA 449641
Query 1600599 TGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGC- 1600657
|||||||||||| | |||||||||| || | ||||||||| || ||| |||| |
Sbjct 449640 TGCGCGACGGGAAGCCGTGCGGGTTCATGATGATGTCGGGC---ACAATGCC-CGAGTCG 449585
Query 1600658 GACCAGGGCATGTCCTC--GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGC 1600715
|| | |||| |||||| ||| || | | |||| || |||||| || |||||||
Sbjct 449584 GAGAACGGCAGGTCCTCCTGGTCGA--CAATGATGCCGACCACGCCCTTCTGCCCGTGGC 449527
Query 1600716 GCGACGACAGTTTGTCGCCCACCTCGGGCTGGCGCATGGCCCGCGTGACGATCTTGACC 1600774
||||||| | |||||||||| ||| ||| | ||| | |||||| | |||||||
Sbjct 449526 GCGACGAGAACTTGTCGCCCAGCTCCGGCCGCCGCGTCTGCCGCGTCTGCACCTTGACC 449468
>seq1
Length=1101474
Score = 93.3 bits (102), Expect = 6e-13
Identities = 105/136 (77%), Gaps = 11/136 (8%)
Strand=Plus/Plus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|| || || || || ||||| |||||||| ||| ||||||||||| ||||||||| |||
Sbjct 786746 GGAGCTGTGGGAGCTCGCACTACCGAGAGTCAGCTGCACCGCGAGCTGGCGTCGGGGCT- 786804
Query 165828 CCGCTGCCC-ATTGGCTTCAAAAACAGCACCGACGG------CAGCGTGGCGA-CG--GC 165877
| ||| ||| | |||||||| ||| |||||||||| ||||||||| | || ||
Sbjct 786805 CAGCTTCCCGGTCGGCTTCAAGAACGGCACCGACGGCTCGCTCAGCGTGGCCATCGACGC 786864
Query 165878 CCTCGATGCCGTGCGC 165893
| ||| ||| ||||||
Sbjct 786865 CATCGGTGCTGTGCGC 786880
>seq26
Length=2648925
Score = 87.8 bits (96), Expect = 3e-11
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 332516 CCGCATCCCGTGTGCGTGGCATCAAGGTTGTTGATGGCCTGGCGCATGTCGCCGTCGGCC 332575
||| |||| | |||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 1028809 CCGAATCCGGCGTGCGTGGACTGCAGGTTGTTGATGGCCTGGCGCATGTCGCCCTCGGCA 1028868
Query 332576 GTGAGCACGATCGCTTCCAGGCCCTCGTCGGTGCACACCAC 332616
||| ||| | ||| | || || |||||| || || ||||
Sbjct 1028869 CTGAACACCAGCGCCGCAAGCCCGTCGTCGCTGTACTCCAC 1028909
>seq12
Length=3629062
Score = 86.0 bits (94), Expect = 9e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|||||| ||||||| |||||||||||| |||| ||||||| ||| |||| || | |||
Sbjct 3038122 GGCGCCATCGGTGCCCGCACCACCGAGTCCCAGCTGCACCGAGAGCTGGCCTCTGGCCTG 3038063
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCC 165887
| | || | |||||||| ||| |||||||||| | | ||| ||| ||||||||
Sbjct 3038062 TCTTTCCCTGTCGGCTTCAAGAACGGCACCGACGGTAACCTGGGTGTTGCCATCGATGCC 3038003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808402896698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |