Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq25 113 5e-20 seq2 98.7 1e-15 seq23 91.5 1e-13 >seq25 Length=4183617 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| ||||| || ||||||||||| Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || || | |||||||||||| || || Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || || | || || ||||| || || Sbjct 2767387 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACC 2767328 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | || || ||||| || ||||| Sbjct 2767327 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| ||||| || ||||||||||| | |||| | Sbjct 2767726 AGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 2767667 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || || | |||||||||||| || || ||||| || Sbjct 2767666 CCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCC 2767607 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | || || ||||| || || || ||||| Sbjct 2767606 TTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTG 2767547 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || ||||| || ||||| Sbjct 2767546 ATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||| ||||| || |||||||||||| || ||| | || ||| Sbjct 2767945 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2767886 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||||| |||||||| || || || ||||| || || || ||| Sbjct 2767885 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 2767826 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || || || |||||||| || | || || || || Sbjct 2767825 ATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTCTTT 2767766 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || ||||| || ||||| Sbjct 2767765 CCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || || ||||| || |||||||||||| Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| |||| ||||| || || || || Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | || || || || || || Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTCGACC 2767100 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || ||||| Sbjct 2767099 TCGAGGGTGATGGTCTTTCCGGT 2767077 >seq2 Length=2210479 Score = 98.7 bits (108), Expect = 1e-15 Identities = 466/727 (64%), Gaps = 19/727 (3%) Strand=Plus/Plus Query 7882 CCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGC 7938 |||||| | ||||||||||| ||| | | || |||| |||||||| || || |||| Sbjct 1077340 CCCATGCTTCGCGTGTTCAACAACACCGCCCGCTATGTTGACCAGGGCGGCAACAAGCGC 1077399 Query 7939 AAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGC-TAAA 7997 |||||| ||||||||| | |||||||||||||| ||| | | || ||| | | | Sbjct 1077400 CCCGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACGTGTTCG-AGTTCATGGA 1077458 Query 7998 TCTGCGTCGCAA-CATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGT 8056 |||||| || ||||| | || || | || | ||| | ||| | | ||| Sbjct 1077459 TCTGCGCAAGAATCATGGAAAG-GAGGAGGTCCGCGCCAGAGATTTGTTCCTGGCTCTGT 1077517 Query 8057 GGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCC 8116 || | |||||||| || |||| ||| || | |||| | ||| | || ||||||| Sbjct 1077518 GGATCCCCGATCTCTTCATGAAGCGAGTCGAGAAGAACGCCGAGTGGACTCTGATGTGCC 1077577 Query 8117 CCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAAC 8176 || | ||||| | || ||||| | || || ||||| | Sbjct 1077578 CCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGCGAGGAGTTCGAGGCCCTGTACGAGA 1077637 Query 8177 AATACGAACACGACGG-CGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCC 8235 | ||||| || || |||| || | | | | || || | | ||| |||| Sbjct 1077638 AGTACGAGGCTGAGGGTCGCGGTCGCAAGACCA-TCAAGGCTCAGAAGCTGTGGTACGCC 1077696 Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295 || |||| ||| | ||| ||||| | || | |||||||||||| ||| |||||| Sbjct 1077697 ATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGACCACTGCAAC 1077756 Query 8296 GCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATT 8355 ||| ||||| || | ||| |||| |||||| | || ||| |||||| | || || Sbjct 1077757 CGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCCAACCTGTGCACAGAGATC 1077816 Query 8356 GTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAAC 8415 | ||||| |||| ||||| || ||||| || ||||| || || || | | | | Sbjct 1077817 ATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCTGGCCTCCCTCGCTCTGCCC 1077876 Query 8416 GCGTTCGTTGATCGACGCTCAA--ACACTTACGACTTTGAACAATTGAAAAA---CGCCG 8470 || | |||||| | || ||| | || |||||||| | || | | | || Sbjct 1077877 GCCTACGTTGA-CTAC-AACAAGGGCGTGTATGACTTTGAGAAGCTGCACGAGGTCACCA 1077934 Query 8471 TGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAG 8530 || ||| || ||||| | | ||||||||||||||||| || ||| || | Sbjct 1077935 TG---GTGGTTGTCCGCAACCTGAACCGCATCATTGATGTCAACCACTACCCCGTGCCCG 1077991 Query 8531 AAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 | || ||| |||||||||||| | ||| | || || || || || ||||| |||| Sbjct 1077992 AGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGGTGTTGGTGTTCAGGGTCTTGCCG 1078051 Query 8591 ACGCGTT 8597 | || || Sbjct 1078052 ATGCTTT 1078058 >seq23 Length=4176071 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| || |||| | || || ||||| ||||| ||||| | Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||| || || || || ||||| || || || || || || ||||| || Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | || || || || ||||| || || || || || || || || | || || |||| Sbjct 893593 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 893652 Query 134704 AAATTTGCAT 134713 |||| ||||| Sbjct 893653 AAATCTGCAT 893662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398216793080