Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 1e-13 seq2 91.5 1e-13 >seq25 Length=4183617 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || | |||| |||| ||| Sbjct 2767489 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCG 2767430 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| |||||||| || | ||||| || || Sbjct 2767429 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 2767370 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | || || | | || || || ||||| || | ||| Sbjct 2767369 ATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTCTTG 2767310 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || ||||| |||||| Sbjct 2767309 CCGGTGAGGGTCTTGACGAAGATCTGCATA 2767280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || | |||| |||| || Sbjct 2767717 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCC 2767658 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| |||||||| || | ||||| || || Sbjct 2767657 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 2767598 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | || || | | || || || ||||| || | ||| Sbjct 2767597 ATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTCTTG 2767538 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || || || ||||| |||||| Sbjct 2767537 CCGGTCAGGGTCTTGACGAAGATCTGCATA 2767508 >seq2 Length=2210479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 284/434 (65%), Gaps = 7/434 (2%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || ||| |||| ||||| || | |||| || |||||| || ||||||||||| || Sbjct 1077591 GGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAA 1077532 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 | ||| || | ||| | || |||| |||||| || ||| || | |||| Sbjct 1077531 GAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTC-CTTTCCAT 1077473 Query 131722 AAtt-tttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780 ||| || || || | || || || | ||| || ||||| || || | || | | Sbjct 1077472 GATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGG 1077413 Query 131781 CCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATA 131837 | | ||||| |||| || ||||| || | ||||| || | |||||||| | | Sbjct 1077412 CAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACA 1077353 Query 131838 CGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCAT 131897 |||| | |||||| | ||| |||| | |||||||| | ||| || || Sbjct 1077352 CGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGG 1077293 Query 131898 TGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCG 131956 | || | ||| ||| || ||||| ||||| || || ||| | || ||||| | ||| Sbjct 1077292 TAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATGGCG 1077234 Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAG 132016 || | | || |||| ||||||||| || | |||||| | ||||| || | ||| Sbjct 1077233 CAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 1077174 Query 132017 CAAGAGGACAACTG 132030 || || || | ||| Sbjct 1077173 CACGACGAGAGCTG 1077160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934249812248