Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq25 91.5 1e-13
seq2 91.5 1e-13
>seq25
Length=4183617
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || || || |||||||| || | |||| |||| |||
Sbjct 2767489 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCG 2767430
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || ||| | ||||||||||| |||||||| || | ||||| || ||
Sbjct 2767429 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 2767370
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| |||| | | || | || || | | || || || ||||| || | |||
Sbjct 2767369 ATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTCTTG 2767310
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || || || ||||| ||||||
Sbjct 2767309 CCGGTGAGGGTCTTGACGAAGATCTGCATA 2767280
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || || || || |||||||| || | |||| |||| ||
Sbjct 2767717 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCC 2767658
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || ||| | ||||||||||| |||||||| || | ||||| || ||
Sbjct 2767657 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 2767598
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| |||| | | || | || || | | || || || ||||| || | |||
Sbjct 2767597 ATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTCTTG 2767538
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||||| || || || ||||| ||||||
Sbjct 2767537 CCGGTCAGGGTCTTGACGAAGATCTGCATA 2767508
>seq2
Length=2210479
Score = 91.5 bits (100), Expect = 1e-13
Identities = 284/434 (65%), Gaps = 7/434 (2%)
Strand=Plus/Minus
Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661
||| || ||| |||| ||||| || | |||| || |||||| || ||||||||||| ||
Sbjct 1077591 GGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAA 1077532
Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721
| ||| || | ||| | || |||| |||||| || ||| || | ||||
Sbjct 1077531 GAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTC-CTTTCCAT 1077473
Query 131722 AAtt-tttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780
||| || || || | || || || | ||| || ||||| || || | || | |
Sbjct 1077472 GATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGG 1077413
Query 131781 CCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATA 131837
| | ||||| |||| || ||||| || | ||||| || | |||||||| | |
Sbjct 1077412 CAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACA 1077353
Query 131838 CGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCAT 131897
|||| | |||||| | ||| |||| | |||||||| | ||| || ||
Sbjct 1077352 CGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGG 1077293
Query 131898 TGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCG 131956
| || | ||| ||| || ||||| ||||| || || ||| | || ||||| | |||
Sbjct 1077292 TAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATGGCG 1077234
Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAG 132016
|| | | || |||| ||||||||| || | |||||| | ||||| || | |||
Sbjct 1077233 CAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 1077174
Query 132017 CAAGAGGACAACTG 132030
|| || || | |||
Sbjct 1077173 CACGACGAGAGCTG 1077160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424934249812248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |