Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq9 105 2e-17
seq2 93.3 1e-13
>seq9
Length=477563
Score = 105 bits (116), Expect = 2e-17
Identities = 369/554 (67%), Gaps = 29/554 (5%)
Strand=Plus/Minus
Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389
|||| ||| ||||| |||||||| || || |||||||| | || |||||| |
Sbjct 52224 GGCCTCGTTCTGGACGGCCGAGGAGATCGACCTGTCCAAGGATATCCATGACTGGAACAA 52165
Query 443390 ACGACTATCTAGCCATGAAC-GCGATTTCTTCAAAT-GCA---TCTTGGCCTTCTTTGCA 443444
|| ||| | | |||| ||| |||||||| | ||| ||||| ||||||| ||
Sbjct 52164 CCGCCTAAC---CGATGACGAGCG-TTTCTTCATCTCGCACATTCTTG-CCTTCTTCGCC 52110
Query 443445 CCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGT--AGTGT 443502
|| ||||| || ||| ||||| ||||| ||||||| || ||| || ||
Sbjct 52109 GCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCAGCGCCGAGGTGCAG-GT 52051
Query 443503 ACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGG 443562
| | |||||||||| |||||||| ||||| | ||||||||||| ||| |||||
Sbjct 52050 GC-CTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGA 51992
Query 443563 TCTACAGTCAGTTGATCAA-GACAC-TAATTCCGAACGAAGACGAACAGCGGTCCATCTT 443620
|||| || | || ||| ||||| || || || || | ||||| || || |
Sbjct 51991 CCTAC--TC-GCTGCTCATTGACACCTACATC--AAGGAGCCCTCGCAGCGCACCTTCCT 51937
Query 443621 CT-CATCGTTCATGAC--CACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTG 443677
|| || || |||| || || ||||| | ||| | |||||| | | ||
Sbjct 51936 CTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTG 51877
Query 443678 GCTCGA--ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAA 443735
| | | || || | || || || | |||| || || || ||||| | |||||
Sbjct 51876 GATTCAGGACAAGGAGTCGTC--CTACGGCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAG 51819
Query 443736 GGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTAT 443795
|| | || || ||||| || || | || ||||||||| | || ||||| || | ||
Sbjct 51818 GGCATCTTCTTCAGCGGT-GCCTTCTCGTCGATCTTCTGGATCAAGAAGCGCGGCATGAT 51760
Query 443796 GCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTT 443855
|| ||| |||||||| ||||| |||||| || ||||||||| |||| ||||||
Sbjct 51759 GCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTT 51700
Query 443856 CGCCTGTCTTCTCT 443869
|||||| || ||||
Sbjct 51699 CGCCTGCCTGCTCT 51686
>seq2
Length=2210479
Score = 93.3 bits (102), Expect = 1e-13
Identities = 363/553 (66%), Gaps = 22/553 (4%)
Strand=Plus/Plus
Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031
|| || || || ||| | || |||||||||||| || ||||| || || || || |||
Sbjct 1077331 GGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGCTATGTTGACCAGGGCGGC 1077390
Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG- 255090
||| ||||| || || || |||||||||| |||||||||||||||||| || ||
Sbjct 1077391 AACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGAC-GTGTTCGA 1077449
Query 255091 GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACAC 255150
||| | ||| | | || || | |||||| | |||| | || | | |
Sbjct 1077450 GTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGTCCGCGCCAGAGATTTGTTCCT 1077509
Query 255151 CGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGA--GACGAGACCTGGAG 255207
||| | ||| | |||||| || ||| || || || | || | |||| ||||
Sbjct 1077510 GGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGAGAAGAACGCCGAG---TGGAC 1077566
Query 255208 CCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAA 255267
|| ||||| |||||| | |||||||| | ||||| | || || ||||| ||
Sbjct 1077567 TCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGCGAGGAGTTCGAGGC 1077626
Query 255268 ACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGA 255326
||||| | |||||||| || || || | ||| | | | | | || |||||
Sbjct 1077627 CCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCA-TCAAGGCTCAGAAGC 1077685
Query 255327 TCTGGAACACGATGGT-GCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAA 255385
| ||| || | || | | | | ||| || ||||| | || ||| | || ||||
Sbjct 1077686 TGTGGTACGCCATCCTCGAGGCT-CAGACCGAGACCGGCAACCCCTTCATGCTGTACAAG 1077744
Query 255386 GACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCT 255444
|||||| || |||| | | ||||| ||| ||||| || ||| |||| |||||
Sbjct 1077745 GACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGTACCATTCGCAGCTCCAACCT 1077803
Query 255445 GTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTTGCAACTTGGC 255501
|||||| ||||| | ||| || | || | | |||||||| || |||||| ||||
Sbjct 1077804 GTGCACAGAGAT--CATTGAGTAC-TGCGCTCCCGATGAGGTGGCTGTGTGCAACCTGGC 1077860
Query 255502 GTCCATCTCGCTC 255514
||| |||||||
Sbjct 1077861 CTCC--CTCGCTC 1077871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588335409833905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |