Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq9 105 2e-17 seq2 93.3 1e-13 >seq9 Length=477563 Score = 105 bits (116), Expect = 2e-17 Identities = 369/554 (67%), Gaps = 29/554 (5%) Strand=Plus/Minus Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389 |||| ||| ||||| |||||||| || || |||||||| | || |||||| | Sbjct 52224 GGCCTCGTTCTGGACGGCCGAGGAGATCGACCTGTCCAAGGATATCCATGACTGGAACAA 52165 Query 443390 ACGACTATCTAGCCATGAAC-GCGATTTCTTCAAAT-GCA---TCTTGGCCTTCTTTGCA 443444 || ||| | | |||| ||| |||||||| | ||| ||||| ||||||| || Sbjct 52164 CCGCCTAAC---CGATGACGAGCG-TTTCTTCATCTCGCACATTCTTG-CCTTCTTCGCC 52110 Query 443445 CCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGT--AGTGT 443502 || ||||| || ||| ||||| ||||| ||||||| || ||| || || Sbjct 52109 GCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCAGCGCCGAGGTGCAG-GT 52051 Query 443503 ACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGG 443562 | | |||||||||| |||||||| ||||| | ||||||||||| ||| ||||| Sbjct 52050 GC-CTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGA 51992 Query 443563 TCTACAGTCAGTTGATCAA-GACAC-TAATTCCGAACGAAGACGAACAGCGGTCCATCTT 443620 |||| || | || ||| ||||| || || || || | ||||| || || | Sbjct 51991 CCTAC--TC-GCTGCTCATTGACACCTACATC--AAGGAGCCCTCGCAGCGCACCTTCCT 51937 Query 443621 CT-CATCGTTCATGAC--CACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTG 443677 || || || |||| || || ||||| | ||| | |||||| | | || Sbjct 51936 CTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTG 51877 Query 443678 GCTCGA--ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAA 443735 | | | || || | || || || | |||| || || || ||||| | ||||| Sbjct 51876 GATTCAGGACAAGGAGTCGTC--CTACGGCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAG 51819 Query 443736 GGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTAT 443795 || | || || ||||| || || | || ||||||||| | || ||||| || | || Sbjct 51818 GGCATCTTCTTCAGCGGT-GCCTTCTCGTCGATCTTCTGGATCAAGAAGCGCGGCATGAT 51760 Query 443796 GCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTT 443855 || ||| |||||||| ||||| |||||| || ||||||||| |||| |||||| Sbjct 51759 GCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTT 51700 Query 443856 CGCCTGTCTTCTCT 443869 |||||| || |||| Sbjct 51699 CGCCTGCCTGCTCT 51686 >seq2 Length=2210479 Score = 93.3 bits (102), Expect = 1e-13 Identities = 363/553 (66%), Gaps = 22/553 (4%) Strand=Plus/Plus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 || || || || ||| | || |||||||||||| || ||||| || || || || ||| Sbjct 1077331 GGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGCTATGTTGACCAGGGCGGC 1077390 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG- 255090 ||| ||||| || || || |||||||||| |||||||||||||||||| || || Sbjct 1077391 AACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGAC-GTGTTCGA 1077449 Query 255091 GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACAC 255150 ||| | ||| | | || || | |||||| | |||| | || | | | Sbjct 1077450 GTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGTCCGCGCCAGAGATTTGTTCCT 1077509 Query 255151 CGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGA--GACGAGACCTGGAG 255207 ||| | ||| | |||||| || ||| || || || | || | |||| |||| Sbjct 1077510 GGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGAGAAGAACGCCGAG---TGGAC 1077566 Query 255208 CCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAA 255267 || ||||| |||||| | |||||||| | ||||| | || || ||||| || Sbjct 1077567 TCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGCGAGGAGTTCGAGGC 1077626 Query 255268 ACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGA 255326 ||||| | |||||||| || || || | ||| | | | | | || ||||| Sbjct 1077627 CCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCA-TCAAGGCTCAGAAGC 1077685 Query 255327 TCTGGAACACGATGGT-GCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAA 255385 | ||| || | || | | | | ||| || ||||| | || ||| | || |||| Sbjct 1077686 TGTGGTACGCCATCCTCGAGGCT-CAGACCGAGACCGGCAACCCCTTCATGCTGTACAAG 1077744 Query 255386 GACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCT 255444 |||||| || |||| | | ||||| ||| ||||| || ||| |||| ||||| Sbjct 1077745 GACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGTACCATTCGCAGCTCCAACCT 1077803 Query 255445 GTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTTGCAACTTGGC 255501 |||||| ||||| | ||| || | || | | |||||||| || |||||| |||| Sbjct 1077804 GTGCACAGAGAT--CATTGAGTAC-TGCGCTCCCGATGAGGTGGCTGTGTGCAACCTGGC 1077860 Query 255502 GTCCATCTCGCTC 255514 ||| ||||||| Sbjct 1077861 CTCC--CTCGCTC 1077871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335409833905