Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 255 7e-63 >seq2 Length=2210479 Score = 255 bits (282), Expect = 7e-63 Identities = 952/1471 (65%), Gaps = 51/1471 (3%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 ||||||| || | ||||| || |||||||| || || || || | || || | ||| Sbjct 1078399 GGTAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAC 1078340 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || |||| || |||||||| |||| ||| | |||||| | | Sbjct 1078339 TGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCT 1078280 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||| || ||||||||| || | | | || || || |||| ||||||||||||| Sbjct 1078279 CCTTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCC-ACATGTCAAACTGC 1078221 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || || || ||||||| |||||| |||| |||| || | | | || Sbjct 1078220 AGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCG 1078161 Query 110945 AATTCACAGCTCG-CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || || | | || ||| | ||||| || ||||| || ||||| | |||| Sbjct 1078160 ATCTC-CACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAG 1078102 Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058 |||| || || | || ||||| |||| || | | ||| |||| || Sbjct 1078101 CTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAG-----CATCGGCA 1078047 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| |||||||| | ||| || || | ||| ||||| || || | ||| || ||| Sbjct 1078046 AGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTG--CTGTTGCG-AGCCTCG 1077990 Query 111119 ---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 ||||| || || ||||||| ||||| || || | ||| | | | ||| Sbjct 1077989 GGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTG 1077930 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 | || || || || ||| | ||| | || | | | | || || || || Sbjct 1077929 ACCTCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGA 1077870 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 |||| || |||| ||||| |||||| |||||| | | |||||| | || ||| Sbjct 1077869 GCGAGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCT 1077810 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||||| || ||| || |||| ||||| ||||| ||||| |||||| Sbjct 1077809 GTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 1077750 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 |||||||| |||||| |||| | || ||||| ||||| | | ||| || || | | Sbjct 1077749 TGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTAC 1077690 Query 111416 CAAA-CATCGGCGGCTGGTACAATGGCGTTGG---CCCGTCCCTCCGCCTCGTACTTTGT 111471 || | | || | | || | |||| ||| | || ||||| ||||||||||| Sbjct 1077689 CACAGCTTCTGAGCCTTG----ATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTC 1077634 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||| ||||| || |||||||| || ||||| ||||| || || || || || Sbjct 1077633 GTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCA 1077574 Query 111532 GAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | |||| ||| | | | ||| ||| || ||||||||||| || || || ||||||| Sbjct 1077573 CATCAGAGTCCACTCGGCGTTCTT-CTCGACTCGCTTCATGAAGAGATCGGGGATCCACA 1077515 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | | || | |||||| || |||| || | || || || || | || | Sbjct 1077514 GAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCA 1077455 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CT 111704 |||||| | | || |||||||| ||||| || |||| || | | || || Sbjct 1077454 TGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCT 1077395 Query 111705 T-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 | | | ||||| || | |||||||| || ||| ||| || ||||||||||| || Sbjct 1077394 TGTTGCCGCCC----TGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGG 1077339 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 || ||||||| || ||||| || || |||| ||| | || | | | Sbjct 1077338 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGG 1077279 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 |||| | | ||||| || |||||| ||| ||||| || || | | || || Sbjct 1077278 TGGACATTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 1077219 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 |||||||||| | || ||| ||||| || | | |||||||| || | ||| Sbjct 1077218 TCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTG- 1077160 Query 111944 GGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--G 112000 || || || |||||||| ||||||||||| || | || || ||| | | |||| | Sbjct 1077159 GGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTG 1077102 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| || ||| ||||| | |||| || | || || || |||||| | || Sbjct 1077101 GACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCA 1077042 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGAT 112118 || ||||||| ||||| ||| ||| || | | |||| || ||| |||| || | Sbjct 1077041 ACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGC--TTGAGCAGGT 1076984 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | | ||| ||||| |||| |||||||| Sbjct 1076983 AAGACCGCTCTAGGGTCTTGAAGCCAAAGTA 1076953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031772338400