Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 255 7e-63
>seq2
Length=2210479
Score = 255 bits (282), Expect = 7e-63
Identities = 952/1471 (65%), Gaps = 51/1471 (3%)
Strand=Plus/Minus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
||||||| || | ||||| || |||||||| || || || || | || || | |||
Sbjct 1078399 GGTAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAC 1078340
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || |||| || |||||||| |||| ||| | |||||| | |
Sbjct 1078339 TGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCT 1078280
Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884
|||| || ||||||||| || | | | || || || |||| |||||||||||||
Sbjct 1078279 CCTTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCC-ACATGTCAAACTGC 1078221
Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944
|| | || || || ||||||| |||||| |||| |||| || | | | ||
Sbjct 1078220 AGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCG 1078161
Query 110945 AATTCACAGCTCG-CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
| || || | | || ||| | ||||| || ||||| || ||||| | ||||
Sbjct 1078160 ATCTC-CACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAG 1078102
Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058
|||| || || | || ||||| |||| || | | ||| |||| ||
Sbjct 1078101 CTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAG-----CATCGGCA 1078047
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118
||||| |||||||| | ||| || || | ||| ||||| || || | ||| || |||
Sbjct 1078046 AGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTG--CTGTTGCG-AGCCTCG 1077990
Query 111119 ---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175
||||| || || ||||||| ||||| || || | ||| | | | |||
Sbjct 1077989 GGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTG 1077930
Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235
| || || || || ||| | ||| | || | | | | || || || ||
Sbjct 1077929 ACCTCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGA 1077870
Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295
|||| || |||| ||||| |||||| |||||| | | |||||| | || |||
Sbjct 1077869 GCGAGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCT 1077810
Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355
|| || | |||||| || ||| || |||| ||||| ||||| ||||| ||||||
Sbjct 1077809 GTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 1077750
Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415
|||||||| |||||| |||| | || ||||| ||||| | | ||| || || | |
Sbjct 1077749 TGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTAC 1077690
Query 111416 CAAA-CATCGGCGGCTGGTACAATGGCGTTGG---CCCGTCCCTCCGCCTCGTACTTTGT 111471
|| | | || | | || | |||| ||| | || ||||| |||||||||||
Sbjct 1077689 CACAGCTTCTGAGCCTTG----ATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTC 1077634
Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531
||| ||||| || |||||||| || ||||| ||||| || || || || ||
Sbjct 1077633 GTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCA 1077574
Query 111532 GAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590
| |||| ||| | | | ||| ||| || ||||||||||| || || || |||||||
Sbjct 1077573 CATCAGAGTCCACTCGGCGTTCTT-CTCGACTCGCTTCATGAAGAGATCGGGGATCCACA 1077515
Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650
| | || | |||||| || |||| || | || || || || | || |
Sbjct 1077514 GAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCA 1077455
Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CT 111704
|||||| | | || |||||||| ||||| || |||| || | | || ||
Sbjct 1077454 TGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCT 1077395
Query 111705 T-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763
| | | ||||| || | |||||||| || ||| ||| || ||||||||||| ||
Sbjct 1077394 TGTTGCCGCCC----TGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGG 1077339
Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823
|| ||||||| || ||||| || || |||| ||| | || | | |
Sbjct 1077338 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGG 1077279
Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883
|||| | | ||||| || |||||| ||| ||||| || || | | || ||
Sbjct 1077278 TGGACATTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 1077219
Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943
|||||||||| | || ||| ||||| || | | |||||||| || | |||
Sbjct 1077218 TCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTG- 1077160
Query 111944 GGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--G 112000
|| || || |||||||| ||||||||||| || | || || ||| | | |||| |
Sbjct 1077159 GGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTG 1077102
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| || ||| ||||| | |||| || | || || || |||||| | ||
Sbjct 1077101 GACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCA 1077042
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGAT 112118
|| ||||||| ||||| ||| ||| || | | |||| || ||| |||| || |
Sbjct 1077041 ACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGC--TTGAGCAGGT 1076984
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
| | ||| ||||| |||| ||||||||
Sbjct 1076983 AAGACCGCTCTAGGGTCTTGAAGCCAAAGTA 1076953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031772338400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |