Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 208 9e-49 seq9 91.5 2e-13 >seq2 Length=2210479 Score = 208 bits (230), Expect = 9e-49 Identities = 858/1339 (64%), Gaps = 37/1339 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 |||||||||| ||||| |||||||||||||| ||||| || | || || | || | Sbjct 1078397 TAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTG 1078338 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || || ||||| || | ||| | | | || | ||| Sbjct 1078337 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCC 1078278 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 || || |||||||| || | | | || | | |||||| |||||||| ||| Sbjct 1078277 TTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGG 1078218 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 ||||| || || | || || |||||| | || || | ||||| ||| || | Sbjct 1078217 ATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATC 1078158 Query 118422 TCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT 118478 || ||| || | || || ||||| || || || || || || | |||| Sbjct 1078157 TCCACCGAGGCCGAC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 1078101 Query 118479 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 || |||||| |||| ||||| | | || || | | || |||| || ||||| Sbjct 1078100 TCCCGAGCCTCGGCGGACTCAAAGGGCATGCG-CAGAGCGAGGAAAGCATCGGCAAGACC 1078042 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CAC 118594 || ||||| | || || ||||| || | ||| || || ||||| ||| ||| Sbjct 1078041 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCAC 1077985 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 ||| || || ||| || | | || || || | || ||| | |||| || Sbjct 1077984 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 1077925 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 || ||||| || | ||| | || | | | | || || || || |||| Sbjct 1077924 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAG 1077865 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || ||||| || ||||||| |||||| | | |||||| || || || ||||| Sbjct 1077864 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCA 1077805 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 || ||| || || |||||| |||| |||||| || || ||| ||| || || Sbjct 1077804 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 1077745 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA- 118893 |||||| |||||| | || | || ||||| || || | || ||| || || | ||| | Sbjct 1077744 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAG 1077685 Query 118894 CATCGGCAGCTGGCACAGTGGCGTTGG---CTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 | || | || | ||| ||| | || ||||| |||||||||| ||| | Sbjct 1077684 CTTCTGAGCCTTGA----TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACA 1077629 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 |||| || ||||| || || | || | || || || || | ||||| | | Sbjct 1077628 GGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCA 1077569 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 ||| ||| | | || ||| || |||||||||||||| || |||||||| || ||| Sbjct 1077568 GAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCA 1077509 Query 119071 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 ||| | ||| | ||| | || || | || ||||| |||| |||| || | Sbjct 1077508 GGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACT 1077449 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGAC 119184 | | | || ||||||||||| || ||||| | || | | || ||| | Sbjct 1077448 CGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTT--GTT 1077391 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 | || |||||| ||||| | || ||| ||| || || |||||||| || ||||||| Sbjct 1077390 G-CCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATAC 1077332 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 ||| ||| |||||| || || |||| ||| | || | || | ||||| | Sbjct 1077331 CATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACAT 1077272 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 | |||||| || || ||| ||| ||||| ||||| | |||| || | |||| Sbjct 1077271 TGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGA 1077212 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG- 119423 | || || || |||| |||| | | | |||||||| ||| | || |||||| Sbjct 1077211 TACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTG-GGCCTGC 1077153 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 119481 || ||||||||||||||||| || || | || ||| ||| | | |||| ||||||| Sbjct 1077152 GGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATCA 1077095 Query 119482 TGTCGTAGGTCTCCAAGAC 119500 || ||||||||| | ||| Sbjct 1077094 AGTTGTAGGTCTCGATGAC 1077076 >seq9 Length=477563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 288/441 (65%), Gaps = 4/441 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| |||||||| |||||||| ||||| ||| ||| ||| |||||||| Sbjct 51409 TAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCATG 51468 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | || | | || | || || || Sbjct 51469 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TGTCGTTGCCGAGAGCCACCAGCAGGCG 51527 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| |||| || |||||| || | ||| || Sbjct 51528 GTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCGCA 51587 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || ||||||| ||| ||||||| |||| || || | ||| || Sbjct 51588 GGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCATCGGTGATGATTCTCTG 51647 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCT 130025 ||| ||| ||| || | | || | || |||||| ||| || || Sbjct 51648 GATGACGTCCTTGCTGGGGCGGT-GCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTCGG 51706 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||| |||||||||||||| ||||| || || || |||||| ||| || ||||| | | Sbjct 51707 TGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGC 51766 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | |||||||| | |||||| |||| | || | || ||||||||| ||||| || Sbjct 51767 CGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGG 51826 Query 130146 ACGCGAACGCAAAGAGACGCT 130166 || || |||| || |||| Sbjct 51827 CGGCAAAGGCAACCAGGCGCT 51847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434975817240