Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2 208 9e-49
seq9 91.5 2e-13
>seq2
Length=2210479
Score = 208 bits (230), Expect = 9e-49
Identities = 858/1339 (64%), Gaps = 37/1339 (3%)
Strand=Plus/Minus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
|||||||||| ||||| |||||||||||||| ||||| || | || || | || |
Sbjct 1078397 TAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTG 1078338
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
|| ||||||||||| |||| || || ||||| || | ||| | | | || | |||
Sbjct 1078337 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCC 1078278
Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361
|| || |||||||| || | | | || | | |||||| |||||||| |||
Sbjct 1078277 TTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGG 1078218
Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421
||||| || || | || || |||||| | || || | ||||| ||| || |
Sbjct 1078217 ATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATC 1078158
Query 118422 TCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT 118478
|| ||| || | || || ||||| || || || || || || | ||||
Sbjct 1078157 TCCACCGAGGCCGAC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 1078101
Query 118479 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537
|| |||||| |||| ||||| | | || || | | || |||| || |||||
Sbjct 1078100 TCCCGAGCCTCGGCGGACTCAAAGGGCATGCG-CAGAGCGAGGAAAGCATCGGCAAGACC 1078042
Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CAC 118594
|| ||||| | || || ||||| || | ||| || || ||||| ||| |||
Sbjct 1078041 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCAC 1077985
Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654
||| || || ||| || | | || || || | || ||| | |||| ||
Sbjct 1077984 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 1077925
Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714
|| ||||| || | ||| | || | | | | || || || || ||||
Sbjct 1077924 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAG 1077865
Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774
|| ||||| || ||||||| |||||| | | |||||| || || || |||||
Sbjct 1077864 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCA 1077805
Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834
|| ||| || || |||||| |||| |||||| || || ||| ||| || ||
Sbjct 1077804 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 1077745
Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA- 118893
|||||| |||||| | || | || ||||| || || | || ||| || || | ||| |
Sbjct 1077744 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAG 1077685
Query 118894 CATCGGCAGCTGGCACAGTGGCGTTGG---CTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950
| || | || | ||| ||| | || ||||| |||||||||| ||| |
Sbjct 1077684 CTTCTGAGCCTTGA----TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACA 1077629
Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010
|||| || ||||| || || | || | || || || || | ||||| | |
Sbjct 1077628 GGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCA 1077569
Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070
||| ||| | | || ||| || |||||||||||||| || |||||||| || |||
Sbjct 1077568 GAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCA 1077509
Query 119071 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130
||| | ||| | ||| | || || | || ||||| |||| |||| || |
Sbjct 1077508 GGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACT 1077449
Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGAC 119184
| | | || ||||||||||| || ||||| | || | | || ||| |
Sbjct 1077448 CGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTT--GTT 1077391
Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244
| || |||||| ||||| | || ||| ||| || || |||||||| || |||||||
Sbjct 1077390 G-CCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATAC 1077332
Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGT 119304
||| ||| |||||| || || |||| ||| | || | || | ||||| |
Sbjct 1077331 CATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACAT 1077272
Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364
| |||||| || || ||| ||| ||||| ||||| | |||| || | ||||
Sbjct 1077271 TGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGA 1077212
Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG- 119423
| || || || |||| |||| | | | |||||||| ||| | || ||||||
Sbjct 1077211 TACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTG-GGCCTGC 1077153
Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 119481
|| ||||||||||||||||| || || | || ||| ||| | | |||| |||||||
Sbjct 1077152 GGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATCA 1077095
Query 119482 TGTCGTAGGTCTCCAAGAC 119500
|| ||||||||| | |||
Sbjct 1077094 AGTTGTAGGTCTCGATGAC 1077076
>seq9
Length=477563
Score = 91.5 bits (100), Expect = 2e-13
Identities = 288/441 (65%), Gaps = 4/441 (1%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| ||||| |||||||| |||||||| ||||| ||| ||| ||| ||||||||
Sbjct 51409 TAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCATG 51468
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || ||||| | | || | | || | | || | || || ||
Sbjct 51469 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TGTCGTTGCCGAGAGCCACCAGCAGGCG 51527
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||| ||||||| |||| || |||||| || | ||| ||
Sbjct 51528 GTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCGCA 51587
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || ||||||| ||| ||||||| |||| || || | ||| ||
Sbjct 51588 GGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCATCGGTGATGATTCTCTG 51647
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCT 130025
||| ||| ||| || | | || | || |||||| ||| || ||
Sbjct 51648 GATGACGTCCTTGCTGGGGCGGT-GCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTCGG 51706
Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085
||| |||||||||||||| ||||| || || || |||||| ||| || ||||| | |
Sbjct 51707 TGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGC 51766
Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145
| |||||||| | |||||| |||| | || | || ||||||||| ||||| ||
Sbjct 51767 CGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGG 51826
Query 130146 ACGCGAACGCAAAGAGACGCT 130166
|| || |||| || ||||
Sbjct 51827 CGGCAAAGGCAACCAGGCGCT 51847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434975817240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |