Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 275 7e-69 seq9 91.5 2e-13 >seq2 Length=2210479 Score = 275 bits (304), Expect = 7e-69 Identities = 913/1399 (65%), Gaps = 41/1399 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTC 104277 ||| ||| ||||| ||||||| || || | || || |||||| |||| | || Sbjct 1077018 CCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATC--TGGGGA-GACAACGTCGAGCG 1077074 Query 104278 TGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACC 104335 |||| | ||||| ||| || ||||||| |||| | | ||| || || | || ||| Sbjct 1077075 TGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCATGCCTCCCCCACC 1077132 Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 |||||||| |||||||| || |||| | || |||||||| | | || ||| Sbjct 1077133 CTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGACATGAAG 1077192 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||| || | |||||||||| || || | | || || ||||| ||| | Sbjct 1077193 GATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATG 1077252 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||||| || ||||| | | |||| | | | || | ||| |||| || Sbjct 1077253 GCTGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTCTTATATTGCCGGA 1077312 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || ||||| || ||||||| || || ||||||||||| || ||| ||| || ||| Sbjct 1077313 ACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGC 1077372 Query 104576 TATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCC 104628 ||||| | || ||||| | | ||| || | | || |||| || ||||| Sbjct 1077373 TATGTTGACCA----GGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCC 1077428 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||||| || | | |||||| | || |||| || || || | ||||||| Sbjct 1077429 GTGGCACGCCGACGTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGT 1077488 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 || | | ||| | ||| ||||| ||||| || ||||||||||||||| |||| || Sbjct 1077489 CCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGA 1077548 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 | ||| | | | ||| |||| | || || || || || ||||| |||| | Sbjct 1077549 GAAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTA 1077608 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866 || |||||||| || ||||| ||| |||||||||| || |||| ||| || | Sbjct 1077609 CGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTC--GCGGTCGCAAG 1077666 Query 104867 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 || | | || | || | ||||| | || || ||| || |||| |||||||| || | Sbjct 1077667 ACCAT-CAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAA 1077725 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| Sbjct 1077726 CCCCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTAC 1077785 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 || || ||||| || || ||||| ||| | || | | |||||| ||| Sbjct 1077786 CATTCGCAGCTCCAACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGC 1077845 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--A 105103 |||||| ||||| || || ||||||| ||| || || || | | | |||| | | Sbjct 1077846 TGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTACGTTGA-CTACA-ACAAGGGCGTG 1077903 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | ||| || || ||||| || || | || | ||||| ||| | | Sbjct 1077904 TATGACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCGCATC 1077963 Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 |||||| || |||||||| ||| ||||| || || ||| | ||||| Sbjct 1077964 ATTGATGTCAACCACTACCCCGTGCCCGAG---GCTCGCAACAGCAACATGCGCCACCGC 1078020 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATT 105279 || || ||| | |||||||||||||| || |||| ||| | || || ||| | || Sbjct 1078021 CCCATCGGTGTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTCGCTCTG-CGCATGCCCTT 1078079 Query 105280 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGC 105339 ||| |||| ||| || ||| | || || || || |||||||| || ||||| || Sbjct 1078080 TGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCACGCTGC 1078139 Query 105340 TCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 ||| ||| ||| | || ||| || || | || |||| |||||| || Sbjct 1078140 TCTGTCGGCCTCGGTGGAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATGAGGGCTC 1078199 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 105459 ||| | || || || | || || ||||| |||||| | | || ||| | || Sbjct 1078200 TCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCGACCTCTG 1078259 Query 105460 CGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 |||||||| ||| || ||||| | |||||| | ||| |||| |||||||| || Sbjct 1078260 GGACTGGGATAGC-CTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACAGTCTGCTGC 1078318 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 ||||||| ||||| || ||| ||| | || || | || || || || |||||||| | Sbjct 1078319 TGGCTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGC 1078378 Query 105579 CCTACACGACGAACATCTA 105597 | ||||| | || ||||| Sbjct 1078379 CGTACACCTCCAATATCTA 1078397 >seq9 Length=477563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 94864 |||| || | || ||||| || ||||| ||||||||| ||| |||||| | | Sbjct 51847 AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGA 51788 Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924 | | ||| |||||||||| || | ||||| || || ||||||||||||||| |||| Sbjct 51787 TCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCT 51728 Query 94925 CTCGTGACGAGGGACTCCAC 94944 | ||||||||||| || ||| Sbjct 51727 CGCGTGACGAGGGTCTGCAC 51708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260588567960