Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 275 7e-69
seq9 91.5 2e-13
>seq2
Length=2210479
Score = 275 bits (304), Expect = 7e-69
Identities = 913/1399 (65%), Gaps = 41/1399 (3%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTC 104277
||| ||| ||||| ||||||| || || | || || |||||| |||| | ||
Sbjct 1077018 CCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATC--TGGGGA-GACAACGTCGAGCG 1077074
Query 104278 TGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACC 104335
|||| | ||||| ||| || ||||||| |||| | | ||| || || | || |||
Sbjct 1077075 TGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCATGCCTCCCCCACC 1077132
Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395
|||||||| |||||||| || |||| | || |||||||| | | || |||
Sbjct 1077133 CTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGACATGAAG 1077192
Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455
|| ||| || | |||||||||| || || | | || || ||||| ||| |
Sbjct 1077193 GATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATG 1077252
Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515
||||| || ||||| | | |||| | | | || | ||| |||| ||
Sbjct 1077253 GCTGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTCTTATATTGCCGGA 1077312
Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575
|| ||||| || ||||||| || || ||||||||||| || ||| ||| || |||
Sbjct 1077313 ACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGC 1077372
Query 104576 TATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCC 104628
||||| | || ||||| | | ||| || | | || |||| || |||||
Sbjct 1077373 TATGTTGACCA----GGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCC 1077428
Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688
|||||||| || | | |||||| | || |||| || || || | |||||||
Sbjct 1077429 GTGGCACGCCGACGTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGT 1077488
Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748
|| | | ||| | ||| ||||| ||||| || ||||||||||||||| |||| ||
Sbjct 1077489 CCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGA 1077548
Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808
| ||| | | | ||| |||| | || || || || || ||||| |||| |
Sbjct 1077549 GAAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTA 1077608
Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866
|| |||||||| || ||||| ||| |||||||||| || |||| ||| || |
Sbjct 1077609 CGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTC--GCGGTCGCAAG 1077666
Query 104867 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925
|| | | || | || | ||||| | || || ||| || |||| |||||||| || |
Sbjct 1077667 ACCAT-CAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAA 1077725
Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985
|| | |||||| ||||| ||| ||| |||| ||||| || || ||||| |||||
Sbjct 1077726 CCCCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTAC 1077785
Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045
|| || ||||| || || ||||| ||| | || | | |||||| |||
Sbjct 1077786 CATTCGCAGCTCCAACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGC 1077845
Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--A 105103
|||||| ||||| || || ||||||| ||| || || || | | | |||| | |
Sbjct 1077846 TGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTACGTTGA-CTACA-ACAAGGGCGTG 1077903
Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163
| ||| | ||| || || ||||| || || | || | ||||| ||| | |
Sbjct 1077904 TATGACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCGCATC 1077963
Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220
|||||| || |||||||| ||| ||||| || || ||| | |||||
Sbjct 1077964 ATTGATGTCAACCACTACCCCGTGCCCGAG---GCTCGCAACAGCAACATGCGCCACCGC 1078020
Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATT 105279
|| || ||| | |||||||||||||| || |||| ||| | || || ||| | ||
Sbjct 1078021 CCCATCGGTGTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTCGCTCTG-CGCATGCCCTT 1078079
Query 105280 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGC 105339
||| |||| ||| || ||| | || || || || |||||||| || ||||| ||
Sbjct 1078080 TGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCACGCTGC 1078139
Query 105340 TCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399
||| ||| ||| | || ||| || || | || |||| |||||| ||
Sbjct 1078140 TCTGTCGGCCTCGGTGGAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATGAGGGCTC 1078199
Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 105459
||| | || || || | || || ||||| |||||| | | || ||| | ||
Sbjct 1078200 TCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCGACCTCTG 1078259
Query 105460 CGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518
|||||||| ||| || ||||| | |||||| | ||| |||| |||||||| ||
Sbjct 1078260 GGACTGGGATAGC-CTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACAGTCTGCTGC 1078318
Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578
||||||| ||||| || ||| ||| | || || | || || || || |||||||| |
Sbjct 1078319 TGGCTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGC 1078378
Query 105579 CCTACACGACGAACATCTA 105597
| ||||| | || |||||
Sbjct 1078379 CGTACACCTCCAATATCTA 1078397
>seq9
Length=477563
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 94864
|||| || | || ||||| || ||||| ||||||||| ||| |||||| | |
Sbjct 51847 AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGA 51788
Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924
| | ||| |||||||||| || | ||||| || || ||||||||||||||| ||||
Sbjct 51787 TCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCT 51728
Query 94925 CTCGTGACGAGGGACTCCAC 94944
| ||||||||||| || |||
Sbjct 51727 CGCGTGACGAGGGTCTGCAC 51708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260588567960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |