Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 172 2e-37 seq25 138 3e-27 seq23 100 9e-16 seq2 93.3 1e-13 seq26 91.5 4e-13 >seq7 Length=520767 Score = 172 bits (190), Expect = 2e-37 Identities = 465/704 (66%), Gaps = 8/704 (1%) Strand=Plus/Minus Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 |||| || || ||||| || || || | |||||| || || || |||||||| || Sbjct 398319 TTACCGTGCCCGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCTCA 398260 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || | || ||||| | || ||||| || || || ||||| || ||||| |||| Sbjct 398259 TTGCCGGCCTGAACGTTCTCCGTATCATTAACGAGCCTACCGCTGCCGCCATTGCCTATG 398200 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | || ||||| | | || || || |||| || || ||| | || ||||||| Sbjct 398199 GTCTCGATAAGAAGGTCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGCGGTGGTA 398140 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 |||| ||||| || || || || |||| || || || || || || || | || |||| Sbjct 398139 CTTTCGATGTGTCGCTCCTTACCATTGAGGACGGTATCTTCGAGGTCAAGTCGACCGCTG 398080 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916 |||| || ||||| ||||| || ||||| ||| | || || || ||| || || || | Sbjct 398079 GTGACACCCATCTGGGTGGTGAGGATTTCGATCACCGCCTGGTCCAGCACTTCGTGAATG 398020 Query 349917 AATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 | || ||||| ||||| || | || | || || | || | || || || Sbjct 398019 AGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCGAACGCTCGTGCTCTCCGCCGTCTC 397961 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035 | ||||| || || ||||| |||||| || | || || | | || ||||| || || Sbjct 397960 CGCACTGCTTGCGAGCGTGCCAAGCGTACCCTTTCGTCGTCCGCTCAGACCTCGATCGAG 397901 Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 |||||||| || ||| || | || |||| | | || ||||| || ||||| || || Sbjct 397900 ATTGATTCGCTGTATGAGGGTATTGACTTCTATACTTCGATTACTCGCGCTCGTTTCGAG 397841 Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 || | || |||||| || | | || || | || || || || | | ||| Sbjct 397840 GAGCTCTGCCAGGATCTCTTCCGCTCGACCATCCAGCCCGTCGACCGTGTCCTGACCGAT 397781 Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || || || ||| ||| | | || | || | |||||||| || || ||||| Sbjct 397780 GCCAAGATCGACAAGTCCCAGGTGCACGAGATCGTGCTCGTTGGTGGATCCACCCGTATC 397721 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTT--TTTTAATGGCAAAGA-ACCTTCTAGATCA 350272 || || | || || | ||| | | | || || ||||| || || | ||| | Sbjct 397720 CCCAAGATCCAGAAGCT--GATCAGCGATCACTTCAACGGCAAGGAGCCCAACAAGAGC- 397664 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || || || ||||| |||||||| || ||||||||||| ||||| Sbjct 397663 ATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAGGC 397620 >seq25 Length=4183617 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||||| | || || | ||||| || ||||| || || || || || || Sbjct 2767739 CATACCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 2767680 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || || || |||||||| ||||| ||||| |||||||| || Sbjct 2767679 AGACAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGG 2767620 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || || ||||| || | |||||| | || Sbjct 2767619 GGGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTC 2767560 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 2767559 GACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 2767511 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 2767452 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || || || |||||||| ||||| ||||| |||||||| || Sbjct 2767451 AGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGG 2767392 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || || ||||| || | ||| || | || Sbjct 2767391 GGGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTC 2767332 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 2767331 GACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||| || || || || || || || | || || ||||| Sbjct 2767948 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2767889 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| || || || || ||||| || || || || || || |||||| Sbjct 2767888 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 2767829 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || | || || || ||||| | ||| |||| ||| ||||| | || | ||| Sbjct 2767828 TGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTC 2767769 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || || || |||||||| Sbjct 2767768 TTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 104 bits (114), Expect = 7e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || ||||| || |||||||| || || || || || || Sbjct 2767283 CATACCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 2767224 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||||||||| || || || || || || Sbjct 2767223 GGAGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGG 2767164 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || ||||| || || | ||| || | || Sbjct 2767163 AGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTC 2767104 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||||||||| Sbjct 2767103 GACCTCGAGGGTGATGGTCTTTCCGGT 2767077 >seq23 Length=4176071 Score = 100 bits (110), Expect = 9e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| ||||| || || ||||||||||| Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || || || || || ||||| || || || ||||| || || | || ||||| || Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | ||| || | || || ||||| || | ||||| || || || || || || ||| Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 893655 ATCTGCAT 893662 >seq2 Length=2210479 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || ||||| | || || ||||| ||||| || || |||||||| || Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| || || || || ||||| || || || ||||| || |||| || || || || Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || || | || || ||||| || | ||||||||||| || || || || || Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 113785 >seq26 Length=2648925 Score = 91.5 bits (100), Expect = 4e-13 Identities = 98/127 (77%), Gaps = 6/127 (5%) Strand=Plus/Minus Query 266994 CGCCACGGACAAAAAGGTACCATTGGT---ACGATTATTCCTGAAGAAAATATGCCATTT 267050 ||||||||||| |||||||| |||||| ||| || | ||||| | |||||||| Sbjct 2473812 CGCCACGGACAGAAAGGTACGATTGGTGTCACG--TACCGCC-AAGAAGACATGCCATTC 2473756 Query 267051 AATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTCCTAGTCGTATG 267110 | ||| ||||||| |||||||| |||||||||||||| || ||||| ||||||| Sbjct 2473755 ACACGAGAGGGAATTACGCCTGATATCATTATTAATCCTCACGCCATTCCCTCTCGTATG 2473696 Query 267111 ACAATTG 267117 || |||| Sbjct 2473695 ACCATTG 2473689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253836988287