Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq7 172 2e-37
seq25 138 3e-27
seq23 100 9e-16
seq2 93.3 1e-13
seq26 91.5 4e-13
>seq7
Length=520767
Score = 172 bits (190), Expect = 2e-37
Identities = 465/704 (66%), Gaps = 8/704 (1%)
Strand=Plus/Minus
Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676
|||| || || ||||| || || || | |||||| || || || |||||||| ||
Sbjct 398319 TTACCGTGCCCGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCTCA 398260
Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736
|||| || | || ||||| | || ||||| || || || ||||| || ||||| ||||
Sbjct 398259 TTGCCGGCCTGAACGTTCTCCGTATCATTAACGAGCCTACCGCTGCCGCCATTGCCTATG 398200
Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796
| || ||||| | | || || || |||| || || ||| | || |||||||
Sbjct 398199 GTCTCGATAAGAAGGTCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGCGGTGGTA 398140
Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856
|||| ||||| || || || || |||| || || || || || || || | || ||||
Sbjct 398139 CTTTCGATGTGTCGCTCCTTACCATTGAGGACGGTATCTTCGAGGTCAAGTCGACCGCTG 398080
Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916
|||| || ||||| ||||| || ||||| ||| | || || || ||| || || || |
Sbjct 398079 GTGACACCCATCTGGGTGGTGAGGATTTCGATCACCGCCTGGTCCAGCACTTCGTGAATG 398020
Query 349917 AATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975
| || ||||| ||||| || | || | || || | || | || || ||
Sbjct 398019 AGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCGAACGCTCGTGCTCTCCGCCGTCTC 397961
Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035
| ||||| || || ||||| |||||| || | || || | | || ||||| || ||
Sbjct 397960 CGCACTGCTTGCGAGCGTGCCAAGCGTACCCTTTCGTCGTCCGCTCAGACCTCGATCGAG 397901
Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095
|||||||| || ||| || | || |||| | | || ||||| || ||||| || ||
Sbjct 397900 ATTGATTCGCTGTATGAGGGTATTGACTTCTATACTTCGATTACTCGCGCTCGTTTCGAG 397841
Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155
|| | || |||||| || | | || || | || || || || | | |||
Sbjct 397840 GAGCTCTGCCAGGATCTCTTCCGCTCGACCATCCAGCCCGTCGACCGTGTCCTGACCGAT 397781
Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215
|| || || ||| ||| | | || | || | |||||||| || || |||||
Sbjct 397780 GCCAAGATCGACAAGTCCCAGGTGCACGAGATCGTGCTCGTTGGTGGATCCACCCGTATC 397721
Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTT--TTTTAATGGCAAAGA-ACCTTCTAGATCA 350272
|| || | || || | ||| | | | || || ||||| || || | ||| |
Sbjct 397720 CCCAAGATCCAGAAGCT--GATCAGCGATCACTTCAACGGCAAGGAGCCCAACAAGAGC- 397664
Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
|| || || ||||| |||||||| || ||||||||||| |||||
Sbjct 397663 ATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAGGC 397620
>seq25
Length=4183617
Score = 138 bits (152), Expect = 3e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||||| | || || | ||||| || ||||| || || || || || ||
Sbjct 2767739 CATACCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 2767680
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || || || || |||||||| ||||| ||||| |||||||| ||
Sbjct 2767679 AGACAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGG 2767620
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || |||||||| || | || || ||||| || | |||||| | ||
Sbjct 2767619 GGGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTC 2767560
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || || || ||||||||
Sbjct 2767559 GACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 2767511 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 2767452
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || || || || |||||||| ||||| ||||| |||||||| ||
Sbjct 2767451 AGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGG 2767392
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || |||||||| || | || || ||||| || | ||| || | ||
Sbjct 2767391 GGGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTC 2767332
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| ||||| || || || || || ||||||||
Sbjct 2767331 GACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
Score = 107 bits (118), Expect = 6e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || || ||||| ||| || || || || || || || | || || |||||
Sbjct 2767948 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2767889
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||| || || || || ||||| || || || || || || ||||||
Sbjct 2767888 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 2767829
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
||||| || | || || || ||||| | ||| |||| ||| ||||| | || | |||
Sbjct 2767828 TGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTC 2767769
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || || || || ||||||||
Sbjct 2767768 TTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 104 bits (114), Expect = 7e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||| || || | | || || ||||| || |||||||| || || || || || ||
Sbjct 2767283 CATACCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 2767224
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||||||||| || || || || || ||
Sbjct 2767223 GGAGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGG 2767164
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || ||||| || || | || ||||| || || | ||| || | ||
Sbjct 2767163 AGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTC 2767104
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || | |||||||||||
Sbjct 2767103 GACCTCGAGGGTGATGGTCTTTCCGGT 2767077
>seq23
Length=4176071
Score = 100 bits (110), Expect = 9e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || || || | || || ||||| ||||| || || |||||||||||
Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || || || || || ||||| || || || ||||| || || | || ||||| ||
Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | ||| || | || || ||||| || | ||||| || || || || || || |||
Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 893655 ATCTGCAT 893662
>seq2
Length=2210479
Score = 93.3 bits (102), Expect = 1e-13
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || ||||| | || || ||||| ||||| || || |||||||| ||
Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
||||| || || || || ||||| || || || ||||| || |||| || || || ||
Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|| | || || | || || ||||| || | ||||||||||| || || || || ||
Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 113785
>seq26
Length=2648925
Score = 91.5 bits (100), Expect = 4e-13
Identities = 98/127 (77%), Gaps = 6/127 (5%)
Strand=Plus/Minus
Query 266994 CGCCACGGACAAAAAGGTACCATTGGT---ACGATTATTCCTGAAGAAAATATGCCATTT 267050
||||||||||| |||||||| |||||| ||| || | ||||| | ||||||||
Sbjct 2473812 CGCCACGGACAGAAAGGTACGATTGGTGTCACG--TACCGCC-AAGAAGACATGCCATTC 2473756
Query 267051 AATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTCCTAGTCGTATG 267110
| ||| ||||||| |||||||| |||||||||||||| || ||||| |||||||
Sbjct 2473755 ACACGAGAGGGAATTACGCCTGATATCATTATTAATCCTCACGCCATTCCCTCTCGTATG 2473696
Query 267111 ACAATTG 267117
|| ||||
Sbjct 2473695 ACCATTG 2473689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253836988287
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |