Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 288 1e-72 seq1 138 1e-27 >seq2 Length=2210479 Score = 288 bits (318), Expect = 1e-72 Identities = 517/749 (69%), Gaps = 6/749 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||| || ||| || | ||||||| ||||| ||| Sbjct 1077032 TCATGCGTGTTGCTGTTGGCATCTGGGGAGACAACGTCGAGCGTGTCATCGAGACCTACA 1077091 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | |||| ||| || || ||| | || ||||| |||||||||||||| Sbjct 1077092 ACTTGATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCTCTTCAACGCTGGTACCC 1077151 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| | ||| ||||||||||| | |||||||||||| || || || | Sbjct 1077152 CGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAGGGTA 1077211 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 |||| || || |||||| || ||| ||||||||| | | ||||| || ||| || Sbjct 1077212 TCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 1077271 Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | || || | ||| |||||| | ||| | || || || || ||| || | Sbjct 1077272 A-TG-TCCACCGTATCCGTGCTACCGGTTCTTATATTGCCGGAACCAATGGCACGTCCAA 1077329 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| ||| | || ||||| ||||| ||||||||||| ||||| || || ||||||| || Sbjct 1077330 TGGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGCTATGTTGACCAGGGCGG 1077389 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 |||||| || | || |||||||||||||||||||||||||||||| | | || Sbjct 1077390 CAACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACGTGTTCGA 1077449 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| | || ||||| |||||| || | || ||| | ||| | | || |||| Sbjct 1077450 GTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGTCCGCGCCAGAGATTTGTTCCT 1077509 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||||||||| || || ||||||||| | || |||||| ||| |||||| || Sbjct 1077510 GGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGAGAAGAACGCCGAGTGGACTCT 1077569 Query 53731 GATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 ||||||||| |||||||||||||| | | | | || |||||| |||||||| | | Sbjct 1077570 GATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTG-CTACGGCGAGGAGTTCGAGGCCC 1077628 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 |||| || ||||| | | |||| ||| |||| ||||||| | || | | Sbjct 1077629 TGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCATCAAGGCTCAGAAGCTGT 1077688 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| ||||| || | || | |||| |||||||| Sbjct 1077689 GGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGACC 1077748 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| |||||||||||||||||| Sbjct 1077749 ACTGCAACCGCAAGAGCAACCAGAAGAAC 1077777 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| |||||| ||||| ||| | ||| | | | | | ||| || Sbjct 1078550 TCAAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCGCACTGTCGTGCAGATGGCTG 1078609 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | ||||||||||| | ||| |||||||| ||||||||||||||| |||| || | || Sbjct 1078610 CCGATCGTGGTGCTTTCATTGACCAGTCGCAGTCTCTGAACATCCACATGAAGGACCCCA 1078669 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | | |||||||| ||| |||||| || |||||||| || | Sbjct 1078670 CGATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACCGGCA 1078729 Query 55908 TGTACTATCTGCGGACCC 55925 ||||||| || || |||| Sbjct 1078730 TGTACTACCTCCGTACCC 1078747 >seq1 Length=1101474 Score = 138 bits (152), Expect = 1e-27 Identities = 199/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||||| || | ||| |||||||||||| ||| |||||||| ||| |||||||||| Sbjct 1012060 ACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGCATCGCCGCCTCCAGCAAGAC 1012119 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 ||| |||||| | |||||| ||||||| | ||| | |||||||| || ||||| ||| Sbjct 1012120 GCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTTGTTGGATCCAACAAACGTTT 1012179 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | || | | ||||| || | | | ||||| || || || |||||||| Sbjct 1012180 GCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACCGTGCTGGTAAGCCGTCTGTC 1012239 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGC 117530 | | | || || |||| || | |||||| ||| |||| || ||||| || Sbjct 1012240 CAGAAATATAACCGGCCAACTCAATAACCTTCTCGTCGTGGGTCACATTTCGCTTGAAGC 1012299 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || || |||||||||||||||| |||||||| |||||| Sbjct 1012300 ACGCGTAGATCACCTTGCGCTGACCAGGCTTCAGGCCATCC 1012340 Score = 105 bits (116), Expect = 7e-18 Identities = 266/402 (66%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| ||||| || |||||||||| || ||||||||||| | ||||| || | Sbjct 1011921 CCGGTACCAATGCCGTCGGCACCGTTGATGAGCATCATCGGCACCACGGGGGCATATGTC 1011980 Query 151936 TCCGGCTCCACCTG-TTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994 | ||||| | ||| ||| | || || | | || | || || | | || ||| Sbjct 1011981 TTGGGCTCAATCTGCTTGTTC-TCCTCGAACTGGTGCTCCAGGACAGGCTCATCGTGCGG 1012039 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 | ||| | || || | | || || | |||| | ||||| || | |||||| || Sbjct 1012040 GTGGAAAACACGGCGCGCAAACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGC 1012099 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| ||| || || || |||| || || | |||| |||||| ||| ||||| ||| Sbjct 1012100 ATCGCCGCCTCCAGCAAGACGCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTT 1012159 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||||| || || || | || || | | | ||||| ||||| | ||||| Sbjct 1012160 GTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACC 1012219 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||| || || |||||||| | | || || || ||||||| |||||| ||| Sbjct 1012220 GTGCTGGTAAGCCGTCTGTCCAGAAATATAACCGGCCAACTCAATAACCTTCTCGTCGTG 1012279 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 |||| || ||||| || ||||| |||||||||||||| Sbjct 1012280 GGTCACATTTCGCTTGAAGCACGCGTAGATCACCTTGCGCTG 1012321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCAC---CGGTC 119122 |||| || ||||| || ||| ||||| |||||||||||||| ||||||| ||||| Sbjct 1013958 AATTCCGTGCTGAAAACATTGCACAGCTTCGCACCGTATCCGTTACGACCACCAACGGTC 1014017 Query 119123 ACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCG 119182 || ||| ||||| | ||||||||| | ||||| ||||| || || ||||| ||| Sbjct 1014018 ---TTCTTCTCGTCGTCATCGTAGTTGGAACCCGTCAACAGGTGACCGAAAATGAGTTCG 1014074 Query 119183 GGGATCCAAATGGGCT 119198 || || | ||| ||| Sbjct 1014075 GGAATGTACATGCGCT 1014090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215801634200