Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 288 1e-72
seq1 138 1e-27
>seq2
Length=2210479
Score = 288 bits (318), Expect = 1e-72
Identities = 517/749 (69%), Gaps = 6/749 (1%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || || | || ||| || ||| || | ||||||| ||||| |||
Sbjct 1077032 TCATGCGTGTTGCTGTTGGCATCTGGGGAGACAACGTCGAGCGTGTCATCGAGACCTACA 1077091
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | |||| ||| || || ||| | || ||||| ||||||||||||||
Sbjct 1077092 ACTTGATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCTCTTCAACGCTGGTACCC 1077151
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| | ||| | ||| ||||||||||| | |||||||||||| || || || |
Sbjct 1077152 CGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAGGGTA 1077211
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
|||| || || |||||| || ||| ||||||||| | | ||||| || ||| ||
Sbjct 1077212 TCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 1077271
Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
| || || | ||| |||||| | ||| | || || || || ||| || |
Sbjct 1077272 A-TG-TCCACCGTATCCGTGCTACCGGTTCTTATATTGCCGGAACCAATGGCACGTCCAA 1077329
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| ||| | || ||||| ||||| ||||||||||| ||||| || || ||||||| ||
Sbjct 1077330 TGGTATCATCCCCATGCTTCGCGTGTTCAACAACACCGCCCGCTATGTTGACCAGGGCGG 1077389
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
|||||| || | || |||||||||||||||||||||||||||||| | | ||
Sbjct 1077390 CAACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACGTGTTCGA 1077449
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| | || ||||| |||||| || | || ||| | ||| | | || ||||
Sbjct 1077450 GTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGTCCGCGCCAGAGATTTGTTCCT 1077509
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
||||||||||| || || ||||||||| | || |||||| ||| |||||| ||
Sbjct 1077510 GGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGAGAAGAACGCCGAGTGGACTCT 1077569
Query 53731 GATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
||||||||| |||||||||||||| | | | | || |||||| |||||||| | |
Sbjct 1077570 GATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTG-CTACGGCGAGGAGTTCGAGGCCC 1077628
Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849
|||| || ||||| | | |||| ||| |||| ||||||| | || | |
Sbjct 1077629 TGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCATCAAGGCTCAGAAGCTGT 1077688
Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909
|| | || |||||| || ||| ||||| || | || | |||| ||||||||
Sbjct 1077689 GGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGACC 1077748
Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|||| ||||||||||||||||||
Sbjct 1077749 ACTGCAACCGCAAGAGCAACCAGAAGAAC 1077777
Score = 105 bits (116), Expect = 7e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| | ||| |||||| ||||| ||| | ||| | | | | | ||| ||
Sbjct 1078550 TCAAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCGCACTGTCGTGCAGATGGCTG 1078609
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
| ||||||||||| | ||| |||||||| ||||||||||||||| |||| || | ||
Sbjct 1078610 CCGATCGTGGTGCTTTCATTGACCAGTCGCAGTCTCTGAACATCCACATGAAGGACCCCA 1078669
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| ||| |||| | | | |||||||| ||| |||||| || |||||||| || |
Sbjct 1078670 CGATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACCGGCA 1078729
Query 55908 TGTACTATCTGCGGACCC 55925
||||||| || || ||||
Sbjct 1078730 TGTACTACCTCCGTACCC 1078747
>seq1
Length=1101474
Score = 138 bits (152), Expect = 1e-27
Identities = 199/281 (71%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350
|||||| || | ||| |||||||||||| ||| |||||||| ||| ||||||||||
Sbjct 1012060 ACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGCATCGCCGCCTCCAGCAAGAC 1012119
Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410
||| |||||| | |||||| ||||||| | ||| | |||||||| || ||||| |||
Sbjct 1012120 GCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTTGTTGGATCCAACAAACGTTT 1012179
Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470
| || | | ||||| || | | | ||||| || || || ||||||||
Sbjct 1012180 GCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACCGTGCTGGTAAGCCGTCTGTC 1012239
Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGC 117530
| | | || || |||| || | |||||| ||| |||| || ||||| ||
Sbjct 1012240 CAGAAATATAACCGGCCAACTCAATAACCTTCTCGTCGTGGGTCACATTTCGCTTGAAGC 1012299
Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
| || || |||||||||||||||| |||||||| ||||||
Sbjct 1012300 ACGCGTAGATCACCTTGCGCTGACCAGGCTTCAGGCCATCC 1012340
Score = 105 bits (116), Expect = 7e-18
Identities = 266/402 (66%), Gaps = 2/402 (0%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|||||||| ||||| || |||||||||| || ||||||||||| | ||||| || |
Sbjct 1011921 CCGGTACCAATGCCGTCGGCACCGTTGATGAGCATCATCGGCACCACGGGGGCATATGTC 1011980
Query 151936 TCCGGCTCCACCTG-TTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994
| ||||| | ||| ||| | || || | | || | || || | | || |||
Sbjct 1011981 TTGGGCTCAATCTGCTTGTTC-TCCTCGAACTGGTGCTCCAGGACAGGCTCATCGTGCGG 1012039
Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054
| ||| | || || | | || || | |||| | ||||| || | |||||| ||
Sbjct 1012040 GTGGAAAACACGGCGCGCAAACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGC 1012099
Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114
||| ||| || || || |||| || || | |||| |||||| ||| ||||| |||
Sbjct 1012100 ATCGCCGCCTCCAGCAAGACGCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTT 1012159
Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174
||||| || || || | || || | | | ||||| ||||| | |||||
Sbjct 1012160 GTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACC 1012219
Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234
||| || || |||||||| | | || || || ||||||| |||||| |||
Sbjct 1012220 GTGCTGGTAAGCCGTCTGTCCAGAAATATAACCGGCCAACTCAATAACCTTCTCGTCGTG 1012279
Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276
|||| || ||||| || ||||| ||||||||||||||
Sbjct 1012280 GGTCACATTTCGCTTGAAGCACGCGTAGATCACCTTGCGCTG 1012321
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/136 (74%), Gaps = 6/136 (4%)
Strand=Plus/Plus
Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCAC---CGGTC 119122
|||| || ||||| || ||| ||||| |||||||||||||| ||||||| |||||
Sbjct 1013958 AATTCCGTGCTGAAAACATTGCACAGCTTCGCACCGTATCCGTTACGACCACCAACGGTC 1014017
Query 119123 ACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCG 119182
|| ||| ||||| | ||||||||| | ||||| ||||| || || ||||| |||
Sbjct 1014018 ---TTCTTCTCGTCGTCATCGTAGTTGGAACCCGTCAACAGGTGACCGAAAATGAGTTCG 1014074
Query 119183 GGGATCCAAATGGGCT 119198
|| || | ||| |||
Sbjct 1014075 GGAATGTACATGCGCT 1014090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215801634200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |