Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2 266 4e-66
seq25 179 4e-40
seq23 145 9e-30
seq9 104 3e-17
>seq2
Length=2210479
Score = 266 bits (294), Expect = 4e-66
Identities = 1120/1750 (64%), Gaps = 49/1750 (3%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| |||||||| || |||||||||| | ||||
Sbjct 1078751 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGC 1078692
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| | | ||||||| || |||| ||||||||||||||| |||||
Sbjct 1078691 ATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGAGACTGCGACTGG 1078632
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||||| |||||||| || ||||| | | | | || | |||||||||
Sbjct 1078631 TCAATGAAAGCACCACGATCGGCAGCCATCTGCACGACAGTGCGCTGGGAAATTTCCCAG 1078572
Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265
|| || |||| |||| || | || | || ||| | | || || | |
Sbjct 1078571 ACCGTCTTGTACAGAGCCTT--GATG-TCAGCAGGGATGCTGGCAATGTTCTGGATCGAG 1078515
Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGAC-GTCCAGACACCAAGCTTGTGCAG 80324
|| ||| | || | || |||| | || | | ||| | ||||| | | ||
Sbjct 1078514 CCGTTGTCGGCAATGATGCGGTTCTTCA-TCGAGTCCGACCACAGGCCAAGGTCGACTAG 1078456
Query 80325 ATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATA 80384
||| | | | ||| | || |||||||| || || || ||| | ||
Sbjct 1078455 ATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTA 1078396
Query 80385 CAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGC 80444
| || | ||||| |||||||| ||||||||| || || ||||| | || || ||
Sbjct 1078395 GATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGC 1078336
Query 80445 CGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCG 80504
|| ||||| || | | || ||| || || | ||||| |||||| | |||
Sbjct 1078335 AGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCCTT 1078276
Query 80505 CAAATCTGACCAAAAATCAACCCCAA----CGCTG----TGACC--CCACATGTCGTGCT 80554
|| || || || |||| || || |||| ||||||||| ||
Sbjct 1078275 CAGG-CTATCC------CAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACT 1078223
Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614
||| ||| |||| || | ||||| ||| | | || ||| | |||||| |||||
Sbjct 1078222 GCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGG 1078163
Query 80615 CCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674
| | ||| ||| || || || ||||| || ||| ||| |||| || |||||
Sbjct 1078162 CGATCTCCACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCA 1078103
Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734
| || |||| | | || || | || || || | ||| | || || || |
Sbjct 1078102 GCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGAC 1078043
Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAATT 80793
||||||| || | |||| |||||||||||| |||| | | || ||||| || |
Sbjct 1078042 CCTGAACACCAACACCGATGGGGCGGTGGCGCATGTT-GCTGTTGCGAGCCTCGGGCACG 1077984
Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853
||||| ||| ||| |||| ||||||||||||||| ||| ||| || || ||
Sbjct 1077983 GGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCG 1077924
Query 80854 TGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907
|| || |||| |||||| | | ||| | || | || || || |||
Sbjct 1077923 TGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAGG 1077864
Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967
|| ||||| |||||||| |||||||| || | | | |||| | ||| || ||||||
Sbjct 1077863 GAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCAC 1077804
Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027
| || || ||| ||||||||||| |||||||| |||| |||||| ||||
Sbjct 1077803 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 1077744
Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087
||||| |||| | ||| | ||||||||| ||| | || ||||||||||| ||| | |
Sbjct 1077743 TTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGC 1077684
Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCG 81147
| | ||||||| |||||| || || ||| | ||||| |||| |
Sbjct 1077683 TTCTGAGCCTTGATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCC 1077624
Query 81148 TCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTG 81206
||||||| | |||| | || || | || | ||||||||||| |||||||||||
Sbjct 1077623 TCGAACTCCTCGCCGTAGCAG-TCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGT 1077565
Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266
||| |||| || ||||| || ||||||||| || |||||||| || || |||
Sbjct 1077564 CCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAA 1077505
Query 81267 CAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCAT 81326
|| || | | ||| ||||||| | || || || ||||| || | || || |
Sbjct 1077504 CAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAA 1077445
Query 81327 GATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACC 81383
| ||| || ||||| ||||| || || | ||| | | || ||| ||| ||
Sbjct 1077444 CACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCC 1077385
Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443
||||| || || ||||| || ||| || || || | ||| ||||||||||||| ||
Sbjct 1077384 CTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGA 1077325
Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGAAAGA 81501
| || || || || | ||| || || | || || || || |||| |||
Sbjct 1077324 CGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACATTG--AGA 1077267
Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561
|| |||||||| | | ||| || ||| || || || | ||| ||||| || |||
Sbjct 1077266 CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCC 1077207
Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621
|| ||||| || | |||||||||| || ||| || || | || |||| | | |
Sbjct 1077206 TCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCT--GGGCCTGCGGGG 1077149
Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679
|| || ||||| || || |||| || || |||| | | | ||||||| || |
Sbjct 1077148 TACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGT 1077089
Query 81680 AGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739
|||| || |||| || | | ||| || || || | ||| |||||||| | ||
Sbjct 1077088 AGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCA 1077029
Query 81740 TGTACTGGGG 81749
||| ||||||
Sbjct 1077028 TGTGCTGGGG 1077019
Score = 143 bits (158), Expect = 3e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || ||||| |||||||| || |||||||| ||||| || | |||
Sbjct 113784 CTTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCAT 113843
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| || | ||| |||| || |||||||||||||| ||||| || ||||| ||||||||
Sbjct 113844 CGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 113903
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
||||||||||| ||||| || ||||||| || || || | ||||| || |||| ||
Sbjct 113904 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963
Query 27594 GG 27595
||
Sbjct 113964 GG 113965
>seq25
Length=4183617
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || ||||||||||| |||||
Sbjct 2767281 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGTCG 2767340
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || ||||| | || ||||||||||||||||| || || || || |||
Sbjct 2767341 GATACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 2767400
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| |||||||| | || ||||| | ||||| ||
Sbjct 2767401 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAAC 2767460
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| ||||| | || | ||||| || |||||
Sbjct 2767461 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGG 2767507
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || ||||| | || ||||||||||||||||| || || || || |||
Sbjct 2767569 GATACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 2767628
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || ||||| | || ||||| | ||||| ||
Sbjct 2767629 CAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAAC 2767688
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| ||||| | || | || || || |||||
Sbjct 2767689 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGCCTACGTGGTGG 2767735
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || ||||| || || | || || || |||
Sbjct 2767737 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACGATCACCTTGGAAGTGGAATCATCG 2767796
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || ||||| | || |||||||| |||||||| || || || ||||||
Sbjct 2767797 GATACCATTGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCAG 2767856
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| ||||| ||||| |||||||||| || || || | ||||| ||
Sbjct 2767857 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAAC 2767916
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| |||||| || || ||| | || || |||||||| ||
Sbjct 2767917 ATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCCA 2767966
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| ||||| || || || ||||| ||||| |||| || | ||| | ||| |
Sbjct 2767077 ACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACTATCGACAATGTCAAGTCG 2767136
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || ||||| ||||| ||||| || || |||||||| |||
Sbjct 2767137 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGCGCCTGATCTTTGCTGGCAAG 2767196
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | |||||||| | ||||| || |||| ||||| || || || |||
Sbjct 2767197 CAGCTTGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAT 2767256
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | ||||| ||||| ||
Sbjct 2767257 CTCGTCCTCCGTCTCCGCGGCGG 2767279
>seq23
Length=4176071
Score = 145 bits (160), Expect = 9e-30
Identities = 146/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct 893662 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 893603
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | ||| | || || |||||||||||||| ||||| || |||||
Sbjct 893602 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 893543
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || |||||||| ||||| || ||||||| || ||||| | ||||| ||
Sbjct 893542 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 893483
Query 27586 GTCCAAAAGG 27595
|||| ||||
Sbjct 893482 ATCCAGAAGG 893473
>seq9
Length=477563
Score = 104 bits (114), Expect = 3e-17
Identities = 167/236 (71%), Gaps = 7/236 (3%)
Strand=Plus/Minus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719
|| ||||| || ||||||||||| ||||| | | || |||||| | || |||||
Sbjct 51902 AAGAAGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTCGTCCTACGGCCAGCGC 51843
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|| | || |||||| || || || || ||||| || | |||| || || |||
Sbjct 51842 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 51783
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||| | || ||||| ||| ||||||| || ||| | || || |||||||||||||| ||
Sbjct 51782 TGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGT 51723
Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGAC 64893
|||||||| || ||| || || || | || || ||| |||||||||| ||
Sbjct 51722 GACGAGGGTCTGCACACCGACTT--CGCCTGCCTGCTCTTCTCCCACCTCAAGCAC 51669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310193262480
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