Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 266 4e-66 seq25 179 4e-40 seq23 145 9e-30 seq9 104 3e-17 >seq2 Length=2210479 Score = 266 bits (294), Expect = 4e-66 Identities = 1120/1750 (64%), Gaps = 49/1750 (3%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || |||||||||| | |||| Sbjct 1078751 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGC 1078692 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||||| || |||| ||||||||||||||| ||||| Sbjct 1078691 ATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGAGACTGCGACTGG 1078632 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| |||||||| || ||||| | | | | || | ||||||||| Sbjct 1078631 TCAATGAAAGCACCACGATCGGCAGCCATCTGCACGACAGTGCGCTGGGAAATTTCCCAG 1078572 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265 || || |||| |||| || | || | || ||| | | || || | | Sbjct 1078571 ACCGTCTTGTACAGAGCCTT--GATG-TCAGCAGGGATGCTGGCAATGTTCTGGATCGAG 1078515 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGAC-GTCCAGACACCAAGCTTGTGCAG 80324 || ||| | || | || |||| | || | | ||| | ||||| | | || Sbjct 1078514 CCGTTGTCGGCAATGATGCGGTTCTTCA-TCGAGTCCGACCACAGGCCAAGGTCGACTAG 1078456 Query 80325 ATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATA 80384 ||| | | | ||| | || |||||||| || || || ||| | || Sbjct 1078455 ATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTA 1078396 Query 80385 CAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGC 80444 | || | ||||| |||||||| ||||||||| || || ||||| | || || || Sbjct 1078395 GATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGC 1078336 Query 80445 CGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCG 80504 || ||||| || | | || ||| || || | ||||| |||||| | ||| Sbjct 1078335 AGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCCTT 1078276 Query 80505 CAAATCTGACCAAAAATCAACCCCAA----CGCTG----TGACC--CCACATGTCGTGCT 80554 || || || || |||| || || |||| ||||||||| || Sbjct 1078275 CAGG-CTATCC------CAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACT 1078223 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614 ||| ||| |||| || | ||||| ||| | | || ||| | |||||| ||||| Sbjct 1078222 GCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGG 1078163 Query 80615 CCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674 | | ||| ||| || || || ||||| || ||| ||| |||| || ||||| Sbjct 1078162 CGATCTCCACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCA 1078103 Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734 | || |||| | | || || | || || || | ||| | || || || | Sbjct 1078102 GCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGAC 1078043 Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAATT 80793 ||||||| || | |||| |||||||||||| |||| | | || ||||| || | Sbjct 1078042 CCTGAACACCAACACCGATGGGGCGGTGGCGCATGTT-GCTGTTGCGAGCCTCGGGCACG 1077984 Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853 ||||| ||| ||| |||| ||||||||||||||| ||| ||| || || || Sbjct 1077983 GGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCG 1077924 Query 80854 TGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907 || || |||| |||||| | | ||| | || | || || || ||| Sbjct 1077923 TGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAGG 1077864 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || ||||| |||||||| |||||||| || | | | |||| | ||| || |||||| Sbjct 1077863 GAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCAC 1077804 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | || || ||| ||||||||||| |||||||| |||| |||||| |||| Sbjct 1077803 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 1077744 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| |||| | ||| | ||||||||| ||| | || ||||||||||| ||| | | Sbjct 1077743 TTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGC 1077684 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCG 81147 | | ||||||| |||||| || || ||| | ||||| |||| | Sbjct 1077683 TTCTGAGCCTTGATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCC 1077624 Query 81148 TCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTG 81206 ||||||| | |||| | || || | || | ||||||||||| ||||||||||| Sbjct 1077623 TCGAACTCCTCGCCGTAGCAG-TCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGT 1077565 Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266 ||| |||| || ||||| || ||||||||| || |||||||| || || ||| Sbjct 1077564 CCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAA 1077505 Query 81267 CAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCAT 81326 || || | | ||| ||||||| | || || || ||||| || | || || | Sbjct 1077504 CAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAA 1077445 Query 81327 GATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACC 81383 | ||| || ||||| ||||| || || | ||| | | || ||| ||| || Sbjct 1077444 CACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCC 1077385 Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443 ||||| || || ||||| || ||| || || || | ||| ||||||||||||| || Sbjct 1077384 CTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGA 1077325 Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGAAAGA 81501 | || || || || | ||| || || | || || || || |||| ||| Sbjct 1077324 CGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACATTG--AGA 1077267 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 || |||||||| | | ||| || ||| || || || | ||| ||||| || ||| Sbjct 1077266 CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCC 1077207 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 || ||||| || | |||||||||| || ||| || || | || |||| | | | Sbjct 1077206 TCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCT--GGGCCTGCGGGG 1077149 Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679 || || ||||| || || |||| || || |||| | | | ||||||| || | Sbjct 1077148 TACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGT 1077089 Query 81680 AGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 |||| || |||| || | | ||| || || || | ||| |||||||| | || Sbjct 1077088 AGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCA 1077029 Query 81740 TGTACTGGGG 81749 ||| |||||| Sbjct 1077028 TGTGCTGGGG 1077019 Score = 143 bits (158), Expect = 3e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || ||||| |||||||| || |||||||| ||||| || | ||| Sbjct 113784 CTTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCAT 113843 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||| |||| || |||||||||||||| ||||| || ||||| |||||||| Sbjct 113844 CGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 113903 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 ||||||||||| ||||| || ||||||| || || || | ||||| || |||| || Sbjct 113904 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963 Query 27594 GG 27595 || Sbjct 113964 GG 113965 >seq25 Length=4183617 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || ||||||||||| ||||| Sbjct 2767281 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGTCG 2767340 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||| | || ||||||||||||||||| || || || || ||| Sbjct 2767341 GATACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 2767400 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||| | || ||||| | ||||| || Sbjct 2767401 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAAC 2767460 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| | || | ||||| || ||||| Sbjct 2767461 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGG 2767507 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||| | || ||||||||||||||||| || || || || ||| Sbjct 2767569 GATACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 2767628 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 2767629 CAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAAC 2767688 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| | || | || || || ||||| Sbjct 2767689 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGCCTACGTGGTGG 2767735 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || | || || || ||| Sbjct 2767737 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACGATCACCTTGGAAGTGGAATCATCG 2767796 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||| | || |||||||| |||||||| || || || |||||| Sbjct 2767797 GATACCATTGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCAG 2767856 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| ||||| |||||||||| || || || | ||||| || Sbjct 2767857 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAAC 2767916 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||| || || ||| | || || |||||||| || Sbjct 2767917 ATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCCA 2767966 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||| ||||| |||| || | ||| | ||| | Sbjct 2767077 ACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACTATCGACAATGTCAAGTCG 2767136 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| ||||| ||||| || || |||||||| ||| Sbjct 2767137 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGCGCCTGATCTTTGCTGGCAAG 2767196 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | |||||||| | ||||| || |||| ||||| || || || ||| Sbjct 2767197 CAGCTTGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAT 2767256 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| ||||| || Sbjct 2767257 CTCGTCCTCCGTCTCCGCGGCGG 2767279 >seq23 Length=4176071 Score = 145 bits (160), Expect = 9e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 893662 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 893603 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || || |||||||||||||| ||||| || ||||| Sbjct 893602 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 893543 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 893542 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 893483 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 893482 ATCCAGAAGG 893473 >seq9 Length=477563 Score = 104 bits (114), Expect = 3e-17 Identities = 167/236 (71%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | | || |||||| | || ||||| Sbjct 51902 AAGAAGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTCGTCCTACGGCCAGCGC 51843 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || |||||| || || || || ||||| || | |||| || || ||| Sbjct 51842 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 51783 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| | || ||||| ||| ||||||| || ||| | || || |||||||||||||| || Sbjct 51782 TGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGT 51723 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGAC 64893 |||||||| || ||| || || || | || || ||| |||||||||| || Sbjct 51722 GACGAGGGTCTGCACACCGACTT--CGCCTGCCTGCTCTTCTCCCACCTCAAGCAC 51669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310193262480