Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq25 96.9 2e-15
seq23 84.2 1e-11
>seq25
Length=4183617
Score = 96.9 bits (106), Expect = 2e-15
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|||| ||||||||||||||||| || ||||| || || ||||| || || | || ||
Sbjct 2767945 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2767886
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| || || || || || || | ||||| |||||||| || | |||||||| || ||
Sbjct 2767885 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATC-CTG 2767827
Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTT 34675
| || | || ||| | | || || | || | |||||||||| ||| ||||| |
Sbjct 2767826 AATCTTCGACTTCACGTTGTCAATG-GTATCCGATGATTCCACTTCCAAGGTGATCGTCT 2767768
Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || | || ||||| || ||||||||
Sbjct 2767767 TTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||| | || | |||||| || |||||| || ||||| || || ||
Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| ||||| || || || ||||| || | |||||||||||||| ||
Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTT 2767137
>seq23
Length=4176071
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/199 (70%), Gaps = 10/199 (5%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
|||| || ||||| || || ||||| || || | || ||||| || || || ||||| |
Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT----TTGTT-TTAA 34631
| | |||||||||||||| || | ||||||||||| |||||| ||| ||
Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592
Query 34632 CGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691
||||| || || | |||||| || | ||| || || || || || | || ||
Sbjct 893593 CGATA-----GTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTT 893647
Query 34692 CACAAAAATCTGCATGTTG 34710
||| |||||||||||| ||
Sbjct 893648 CACGAAAATCTGCATGGTG 893666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729488762757
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |