Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 2e-15 seq23 84.2 1e-11 >seq25 Length=4183617 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||||||||||||||||| || ||||| || || ||||| || || | || || Sbjct 2767945 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2767886 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | ||||| |||||||| || | |||||||| || || Sbjct 2767885 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATC-CTG 2767827 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTT 34675 | || | || ||| | | || || | || | |||||||||| ||| ||||| | Sbjct 2767826 AATCTTCGACTTCACGTTGTCAATG-GTATCCGATGATTCCACTTCCAAGGTGATCGTCT 2767768 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || ||||| || |||||||| Sbjct 2767767 TTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | |||||| || |||||| || ||||| || || || Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || ||||| || | |||||||||||||| || Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTT 2767137 >seq23 Length=4176071 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/199 (70%), Gaps = 10/199 (5%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 |||| || ||||| || || ||||| || || | || ||||| || || || ||||| | Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT----TTGTT-TTAA 34631 | | |||||||||||||| || | ||||||||||| |||||| ||| || Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592 Query 34632 CGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691 ||||| || || | |||||| || | ||| || || || || || | || || Sbjct 893593 CGATA-----GTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTT 893647 Query 34692 CACAAAAATCTGCATGTTG 34710 ||| |||||||||||| || Sbjct 893648 CACGAAAATCTGCATGGTG 893666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729488762757