Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq29 89.7 5e-13 >seq29 Length=474253 Score = 89.7 bits (98), Expect = 5e-13 Identities = 126/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTT-CGCTCCCCCGATACTCCGCCCCAAAGT 6914 |||||| | |||||||| | |||||| | || ||| | || ||||| || ||||||| Sbjct 85423 CTGGTCGACGCCCTGTCCGGTATAGTCGGTTTTCGCATCGACG-TACTCGGCACCAAAGT 85481 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA--CCC 6972 | | ||||||||| ||||| ||||||||||| ||||| | ||||| | | | || Sbjct 85482 GGCGCCACTGGAAGCCGTACACCGGGCCCAAATCGCCGACTTCCCG-GTGGCCTAGGCCG 85540 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 ||| |||| || || || || || |||| ||||||||||||| || || Sbjct 85541 ACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 85590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 126/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCC 34379 || || ||||||||||||| |||| || || || || || |||| ||| || | Sbjct 85590 GGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTCGGCCTAGG 85532 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | | ||||| | ||||| ||||||||||| ||||| ||||||||| | |||||||| | Sbjct 85531 CCAC-CGGGAAGTCGGCGATTTGGGCCCGGTGTACGGCTTCCAGTGGCGCCACTTTGGTG 85473 Query 34440 CGGAGTATCGGGGGAGCG-AAGCGGACTATTCGGGACAGGGAGCGGACCAG 34489 | ||||| || | ||| || | |||||| | |||||||| | |||||| Sbjct 85472 CCGAGTA-CGTCGATGCGAAAACCGACTATACCGGACAGGGCGTCGACCAG 85423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262237504880