Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq25 152 1e-31
seq2 147 5e-30
seq23 145 2e-29
>seq25
Length=4183617
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | |||||| |||||||| || |||||||| || || | ||||| | || ||
Sbjct 2767720 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767661
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||| || || || || || || || | || |||||||||
Sbjct 2767660 TCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767601
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||| |||||||| ||||| || ||||| |||||||| |||
Sbjct 2767600 TGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTC 2767541
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 2767540 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| |||||| ||| || |||||||| || || | ||| || | |||||
Sbjct 2767948 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2767889
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || ||||| || ||||| || || | || ||||| |||
Sbjct 2767888 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 2767829
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||| || ||||| || || ||| || || | |||||||||
Sbjct 2767828 TGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTC 2767769
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || |||||||| || || | ||||||
Sbjct 2767768 TTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | |||||| |||||||| || |||||||| || || | ||||| | || ||
Sbjct 2767492 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767433
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || || || || || || || | || |||||||||
Sbjct 2767432 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767373
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||| |||||||| || || || ||||| |||||||| |||
Sbjct 2767372 TGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTC 2767313
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 2767312 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
Score = 140 bits (154), Expect = 8e-28
Identities = 145/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || || ||||| || |||||||| || || | ||||| | || ||
Sbjct 2767264 AGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 2767205
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| ||||| |||||||| ||||| | || |||||||||
Sbjct 2767204 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCC 2767145
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||| || || || || |||||||| ||||| |||
Sbjct 2767144 TGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTCGACCTCGAGGGTGATGGTC 2767085
Query 211083 TTTCCCGTGA 211092
||||| ||||
Sbjct 2767084 TTTCCGGTGA 2767075
>seq2
Length=2210479
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | || |||| ||||| || ||||||||||| || || |||
Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || |||||||| || |||| || ||||||||||||||||| || ||||| |||
Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| || || ||||| || ||||| |||||||| ||||||||||| || ||
Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 113785
Score = 87.8 bits (96), Expect = 4e-12
Identities = 194/288 (67%), Gaps = 6/288 (2%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||| ||||||||||| | |||| ||| || |||||| |||||||| | ||
Sbjct 1077777 GTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTACAGCATGAAGGGGTTGCC 1077721
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||| | |||||| |||| ||| | ||| |||| ||| || || |||||
Sbjct 1077720 GGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTGATGGTCTTGCG 1077661
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| || ||| ||||||||| | ||| || ||||||| ||| || ||| ||
Sbjct 1077660 ACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTC 1077601
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329
| |||||||| ||| |||||||| | ||| |||||| ||| | || |||||
Sbjct 1077600 GGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCG 1077541
Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGC 178377
||||||||||| || | | |||| | || ||| | ||||||||
Sbjct 1077540 CTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGC 1077493
>seq23
Length=4176071
Score = 145 bits (160), Expect = 2e-29
Identities = 145/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | |||||| | ||||| || ||||||||||| || |||||
Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
||||| |||||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|| || || ||| || ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654
Query 211107 ACCTGCAT 211114
| ||||||
Sbjct 893655 ATCTGCAT 893662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151569302585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |