Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq25 105 2e-17 seq23 87.8 4e-12 seq2 86.0 1e-11 >seq25 Length=4183617 Score = 105 bits (116), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| || ||||||||||| || | | || | Sbjct 2767499 GAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 2767440 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || |||||||| || | |||||| |||| | ||| || Sbjct 2767439 GCCGTCCTCGAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCC 2767382 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || || | || | | | || || ||| || |||||| Sbjct 2767381 TCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGA 2767322 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 2767321 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||| ||| || ||||||||||| |||| | ||| | ||||| Sbjct 2767949 GAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 2767890 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || || | ||||||||||| | ||| || ||||| || Sbjct 2767889 CTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATC 2767830 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | | | || || || ||||| | || || || Sbjct 2767829 CTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGT 2767770 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||||||||||| |||||| Sbjct 2767769 CTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| || | | || | || || || | Sbjct 2767715 CAAG-TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCA 2767657 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| || | |||||| |||| | ||| || ||||| || || Sbjct 2767656 GCTGCTTT--CCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 2767599 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || || | || | | | || || ||| || || ||||| || || || Sbjct 2767598 AATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTCTT 2767539 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| ||||||| |||||| Sbjct 2767538 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509 >seq23 Length=4176071 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | ||||| || || || || || ||||| Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||||| | || || ||||| || || || || |||||| | || Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | || || ||| || ||||| || ||||| |||||||| || ||||||||||| Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654 Query 152097 ACCTGCAT 152104 | |||||| Sbjct 893655 ATCTGCAT 893662 >seq2 Length=2210479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | ||| | ||||| || || || || || || ||| Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||||| | || || ||||| || || || || ||||| | || Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| ||| ||| || ||||| || ||||| || || ||||||||||| |||||| Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAG 113784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820371283459