Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq25 105 2e-17
seq23 87.8 4e-12
seq2 86.0 1e-11
>seq25
Length=4183617
Score = 105 bits (116), Expect = 2e-17
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | ||||| || ||||| || ||||||||||| || | | || |
Sbjct 2767499 GAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 2767440
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || || ||||| || |||||||| || | |||||| |||| | ||| ||
Sbjct 2767439 GCCGTCCTCGAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCC 2767382
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || ||||| || || || | || | | | || || ||| || ||||||
Sbjct 2767381 TCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGA 2767322
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| ||||| ||||| ||||||| ||||||
Sbjct 2767321 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| ||| || ||||||||||| |||| | ||| | |||||
Sbjct 2767949 GAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 2767890
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || ||||| || || | ||||||||||| | ||| || ||||| ||
Sbjct 2767889 CTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATC 2767830
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | || | | | || || || ||||| | || || ||
Sbjct 2767829 CTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGT 2767770
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||||||||||| ||||||
Sbjct 2767769 CTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 95.1 bits (104), Expect = 3e-14
Identities = 149/210 (71%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || ||||| || ||||||||||| || | | || | || || || |
Sbjct 2767715 CAAG-TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCA 2767657
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| || |||||||| || | |||||| |||| | ||| || ||||| || ||
Sbjct 2767656 GCTGCTTT--CCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 2767599
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
||| || || || | || | | | || || ||| || || ||||| || || ||
Sbjct 2767598 AATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTCTT 2767539
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || ||||| ||||||| ||||||
Sbjct 2767538 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
>seq23
Length=4176071
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | || | ||||| || || || || || |||||
Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||| ||||||| | || || ||||| || || || || |||||| | ||
Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| | || || ||| || ||||| || ||||| |||||||| || |||||||||||
Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654
Query 152097 ACCTGCAT 152104
| ||||||
Sbjct 893655 ATCTGCAT 893662
>seq2
Length=2210479
Score = 86.0 bits (94), Expect = 1e-11
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| || | | ||| | ||||| || || || || || || |||
Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||| ||||||| | || || ||||| || || || || ||||| | ||
Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| | |||| ||| ||| || ||||| || ||||| || || ||||||||||| ||||||
Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAG 113784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820371283459
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |