Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq25 143 2e-29
seq23 120 2e-22
seq2 86.0 5e-12
>seq25
Length=4183617
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||||||||||| ||||||||||| |||| || ||| | || ||
Sbjct 2767945 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2767886
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || || |||| |||||||| || | || | || ||||| |||
Sbjct 2767885 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 2767826
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | ||||| || | |||||||| |||| || |||||||||
Sbjct 2767825 ATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTCTTT 2767766
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || |||||||||||||| |||||
Sbjct 2767765 CCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 136 bits (150), Expect = 3e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| |||||| ||||||||||| || | || ||| |||| ||
Sbjct 2767718 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 2767659
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || || ||||| | |||||||||||| | || | || ||||| |||
Sbjct 2767658 CAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 2767599
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| | | ||||| || | || || ||||||| || || |||||
Sbjct 2767598 AATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTCTT 2767539
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||| |||||||| |||||
Sbjct 2767538 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| |||||| ||||||||||| || | || ||| |||| ||
Sbjct 2767490 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 2767431
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | |||||||||||| | || | || ||||| |||
Sbjct 2767430 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 2767371
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| | | ||||| || | || || ||||| | || || |||||
Sbjct 2767370 AATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTCTT 2767311
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| |||||||| |||||
Sbjct 2767310 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
Score = 89.7 bits (98), Expect = 4e-13
Identities = 124/172 (72%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| ||| || |||| || |||||||| || |||||
Sbjct 2767244 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAA 2767185
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263
||||| ||||| || || | ||| | || ||||| ||| |||||| ||| || |
Sbjct 2767184 GATCAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 2767125
Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315
|| | || || || | || || ||||| | || || |||||||| ||||
Sbjct 2767124 GT--CGATAGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGA 2767075
>seq23
Length=4176071
Score = 120 bits (132), Expect = 2e-22
Identities = 152/207 (73%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 44137 AAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTT 44196
|||||||| |||| ||||||||||| |||| || ||| | || || ||||||||
Sbjct 893462 AAGCGTGCGAACCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTT 893521
Query 44197 CCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTG 44256
|| |||||||||| ||||| || || | || | || ||||| ||| ||||||
Sbjct 893522 GCCAGCAAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGA 893581
Query 44257 CTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314
||| || ||| | || || || | ||| |||||||| | || || ||||| |||||
Sbjct 893582 CTTGACATTGT--CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTA 893639
Query 44315 AGGGTCTTCACGAAGATTTGCATGATG 44341
|||||||||||||| || |||||| ||
Sbjct 893640 AGGGTCTTCACGAAAATCTGCATGGTG 893666
>seq2
Length=2210479
Score = 86.0 bits (94), Expect = 5e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| || | || || | || || |||||||| || ||||| |
Sbjct 113965 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 113906
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267
| | |||||| || || | || | || ||||| ||| ||||| ||| | |
Sbjct 113905 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGT 113846
Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
| |||||||| | || |||||||| | || || |||||||| ||||| ||||| ||||
Sbjct 113845 CGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGA 113786
Query 44328 AG 44329
||
Sbjct 113785 AG 113784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990272765893
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |