Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25 145 2e-29 seq2 138 3e-27 seq23 127 5e-24 >seq25 Length=4183617 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| ||||||||| | || |||||| || || Sbjct 2767740 CAGATCTTCGTGAAGACTCTGACTGGAAAGACGATCACCTTGGAAGTGGAATCATCGGAT 2767799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||||| || || || ||||| ||||||||||| Sbjct 2767800 ACCATTGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCAGCAG 2767859 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| ||||| | |||||| |||| || ||| || Sbjct 2767860 CGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAACATC 2767919 Query 178104 CAAAAAGA 178111 || || || Sbjct 2767920 CAGAAGGA 2767927 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| || || || Sbjct 2767284 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGTCGGAT 2767343 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||||||||| || || ||||| ||||| ||||| Sbjct 2767344 ACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAGCAG 2767403 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| |||||||| || || | || || | || || ||| || Sbjct 2767404 CGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAACATC 2767463 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 2767464 CAGAAGGAGTCCACCCTTCA-CTTG 2767487 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || |||||||||||||| || || || || ||||| || ||||| Sbjct 2767075 TCACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACTATCGACAATGTCAAGT 2767134 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || |||||||||||||| || || || ||||| || || | Sbjct 2767135 CGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGCGCCTGATCTTTGCTGGCA 2767194 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | || || |||| || ||| |||| || || || || || | Sbjct 2767195 AGCAGCTTGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCC 2767254 Query 178123 ATCTTGT 178129 |||| || Sbjct 2767255 ATCTCGT 2767261 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| || ||||| || || || Sbjct 2767512 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCTGAT 2767571 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||||||||| || || ||||| ||||| ||||| Sbjct 2767572 ACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAGCAG 2767631 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||| || || || | || || | || || ||| || Sbjct 2767632 CGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAACATC 2767691 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 2767692 CAGAAGGAGTCCACCCTTCA-CTTG 2767715 >seq2 Length=2210479 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || |||||||| ||||| || |||||||| |||||||| || ||||||||| Sbjct 113785 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 113844 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || || || || |||||||| || || ||| Sbjct 113845 GACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCTT 113904 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || || || || || ||||| || ||||| ||||||| | || || ||| |||| || Sbjct 113905 ATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963 >seq23 Length=4176071 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || |||||||| |||||||| ||| || Sbjct 893659 CAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCGGAT 893600 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || || || |||||||| || Sbjct 893599 ACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAG 893540 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || ||| |||| || ||| || Sbjct 893539 CGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATC 893480 Query 178104 CAAAA 178108 || || Sbjct 893479 CAGAA 893475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730752738626