Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq25 161 9e-35 seq23 154 1e-32 seq2 105 6e-18 seq28 87.8 2e-12 >seq25 Length=4183617 Score = 161 bits (178), Expect = 9e-35 Identities = 177/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||||| || || |||||||||||||| ||||| |||||||| Sbjct 2767964 GCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 2767905 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || |||||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 2767904 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 2767845 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | || |||||| ||| ||| | || | |||| ||| | | | || || || ||| Sbjct 2767844 GATGCCCTCCTTATCC-TGAATCTTCGACTTC-ACGTTGTCAATGGTATCCGATGATTCC 2767787 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 2767786 ACTTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 132 bits (146), Expect = 4e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || ||||| || || ||||||||| ||||| ||||||||| Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| || || ||||||||||||||||||| || Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTT 2767137 Score = 132 bits (146), Expect = 4e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || ||||| || || ||||| || |||| ||| Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | |||| ||| | | || || |||||| | Sbjct 2767387 ATGCCCTCCTTGTCC-TGAATCTTCGACTTC-ACGTTATCGATGGTATCCGACGACTCGA 2767330 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 2767329 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 >seq23 Length=4176071 Score = 154 bits (170), Expect = 1e-32 Identities = 157/203 (77%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 41663 AGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTG 41722 ||||||| ||||||| ||||| |||||||| |||||||| | || || ||||||||| Sbjct 893463 AGCGTGCGAACCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTG 893522 Query 41723 CCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC 41782 || || || ||||||||||||||||||| ||||| || |||||||||| ||| || | Sbjct 893523 CCAGCAAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGAC 893582 Query 41783 TT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCA 41840 || || | || | ||| || ||||||||||| | || || || || ||||| | Sbjct 893583 TTGACATTGTCG--ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAA 893640 Query 41841 GCGTCTTTACGAAAATCTGCATG 41863 | ||||| ||||||||||||||| Sbjct 893641 GGGTCTTCACGAAAATCTGCATG 893663 >seq2 Length=2210479 Score = 105 bits (116), Expect = 6e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || || || || | || || ||||||||||| || || | Sbjct 113965 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 113906 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || ||||||||||||| ||||| || |||||||||| ||| || ||| ||| | Sbjct 113905 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTT-GACGTTG 113847 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||||||||| | || || || || || || || ||||| ||| Sbjct 113846 TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACG 113787 Query 41852 AA 41853 || Sbjct 113786 AA 113785 >seq28 Length=5637848 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 ||| | || |||||||| ||||| || ||||||| |||||| || ||||| || Sbjct 721526 CGTGTTGCCCCTCGTTCTGGCCTTGCGTCCAAGCACTTCATCGACACCGGTGCCGGCGTG 721467 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| | |||| | | ||||||||||||||||| Sbjct 721466 ATCGACGCCGACTACCGCGGCGAGGTCAAGGTGCTTCTCTTCAACCACGGCGA 721414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303832414800