Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq25 161 9e-35
seq23 154 1e-32
seq2 105 6e-18
seq28 87.8 2e-12
>seq25
Length=4183617
Score = 161 bits (178), Expect = 9e-35
Identities = 177/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | ||||| || || |||||||||||||| ||||| ||||||||
Sbjct 2767964 GCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 2767905
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || |||||||||||||| ||||| ||||||||||| ||||||| |||
Sbjct 2767904 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 2767845
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
| || |||||| ||| ||| | || | |||| ||| | | | || || || |||
Sbjct 2767844 GATGCCCTCCTTATCC-TGAATCTTCGACTTC-ACGTTGTCAATGGTATCCGATGATTCC 2767787
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| || ||||| || || ||||| ||||| ||||| ||||||||
Sbjct 2767786 ACTTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 132 bits (146), Expect = 4e-26
Identities = 115/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| ||||| | || ||||| || || ||||||||| ||||| |||||||||
Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||| || || ||||||||||||||||||| ||
Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTT 2767137
Score = 132 bits (146), Expect = 4e-26
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| ||
Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| || ||||| || || ||||| || |||| |||
Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| | || | |||| ||| | | || || |||||| |
Sbjct 2767387 ATGCCCTCCTTGTCC-TGAATCTTCGACTTC-ACGTTATCGATGGTATCCGACGACTCGA 2767330
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 2767329 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
>seq23
Length=4176071
Score = 154 bits (170), Expect = 1e-32
Identities = 157/203 (77%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 41663 AGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTG 41722
||||||| ||||||| ||||| |||||||| |||||||| | || || |||||||||
Sbjct 893463 AGCGTGCGAACCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTG 893522
Query 41723 CCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC 41782
|| || || ||||||||||||||||||| ||||| || |||||||||| ||| || |
Sbjct 893523 CCAGCAAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGAC 893582
Query 41783 TT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCA 41840
|| || | || | ||| || ||||||||||| | || || || || ||||| |
Sbjct 893583 TTGACATTGTCG--ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAA 893640
Query 41841 GCGTCTTTACGAAAATCTGCATG 41863
| ||||| |||||||||||||||
Sbjct 893641 GGGTCTTCACGAAAATCTGCATG 893663
>seq2
Length=2210479
Score = 105 bits (116), Expect = 6e-18
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||| || || || || | || || ||||||||||| || || |
Sbjct 113965 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 113906
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
| || ||||||||||||| ||||| || |||||||||| ||| || ||| ||| |
Sbjct 113905 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTT-GACGTTG 113847
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||||||||| | || || || || || || || ||||| |||
Sbjct 113846 TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACG 113787
Query 41852 AA 41853
||
Sbjct 113786 AA 113785
>seq28
Length=5637848
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
||| | || |||||||| ||||| || ||||||| |||||| || ||||| ||
Sbjct 721526 CGTGTTGCCCCTCGTTCTGGCCTTGCGTCCAAGCACTTCATCGACACCGGTGCCGGCGTG 721467
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||||||| | |||| | | |||||||||||||||||
Sbjct 721466 ATCGACGCCGACTACCGCGGCGAGGTCAAGGTGCTTCTCTTCAACCACGGCGA 721414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303832414800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |