Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq58 154 3e-32
seq91 105 1e-17
seq45 84.2 5e-11
>seq58
Length=769140
Score = 154 bits (170), Expect = 3e-32
Identities = 187/255 (73%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 230385 AATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG 230444
|||||| || || || || | | ||| |||||||||| || ||| | || ||
Sbjct 628252 AATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 628311
Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504
||| | ||||||||||| || ||| ||||||||||| ||||| ||||||||| |
Sbjct 628312 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 628371
Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564
| || || || || ||||||| |||||||| | | |||||||||| || |||||
Sbjct 628372 GCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGA 628431
Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624
| ||| ||||| || ||||||||||||||||| |||||||| | ||||| ||||
Sbjct 628432 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAA 628491
Query 230625 GCCTGGTGTGATGAA 230639
| ||||||| |||||
Sbjct 628492 GGCTGGTGTCATGAA 628506
>seq91
Length=103379
Score = 105 bits (116), Expect = 1e-17
Identities = 391/601 (65%), Gaps = 24/601 (4%)
Strand=Plus/Minus
Query 319013 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 319072
||||||| ||||| |||| || ||| |||| ||||| | ||||||||| ||| |
Sbjct 16794 AACGCCACTGGATGTACTCCGACGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAGG 16735
Query 319073 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGG 319132
| ||||| | |||||||| ||| || || |||| ||| |||| |||||
Sbjct 16734 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 16675
Query 319133 CTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCA 319192
||| | |||||| ||||| || ||||| || || || || ||||| ||| |
Sbjct 16674 GGACCAGCTCTCCCGTCAGCACGTTGATGAGAGTCGACTTTCCGGCTCCGTTGGGGCCAA 16615
Query 319193 CCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 319252
||| | || | ||| | || || |||| | | | | ||| | ||
Sbjct 16614 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 16555
Query 319253 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 319311
|| || || |||| ||| | || | ||||| || ||||| | |||| |
Sbjct 16554 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 16496
Query 319312 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 319371
||| |||||||||||| |||||||||||||| | || ||| || | |||
Sbjct 16495 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCCCCAAGC 16436
Query 319372 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 319428
|||||||| | || || |||| | ||| |||||||||| ||| || ||||||
Sbjct 16435 TCGTAGTAAGACTTGGCCGA--CGGG-CACTTGCGCACGAACTCGCGCAGGTTACCCTTG 16379
Query 319429 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 319487
|| ||| ||||| | | | ||||| ||||| || | | | ||| || ||||||
Sbjct 16378 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 16323
Query 319488 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 319543
||| || |||||||| ||||| || | |||| || | ||| ||| |||||||
Sbjct 16322 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 16270
Query 319544 ATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCA 319603
| || | |||| | ||||| |||| | ||||||||| |||||||| || ||||
Sbjct 16269 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 16210
Query 319604 G 319604
|
Sbjct 16209 G 16209
>seq45
Length=537551
Score = 84.2 bits (92), Expect = 5e-11
Identities = 195/294 (66%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 319374 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 319433
|||||| ||| | ||||| ||| ||| ||||| | | ||| || || ||||
Sbjct 274064 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCAGCCAGGTTGCCGCGGTACAC 274005
Query 319434 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 319493
||||| ||| || ||||| ||| || |||| || ||||||||||| ||
Sbjct 274004 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 273945
Query 319494 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAA 319553
||||||||| ||||| |||| | | | ||| || || ||||||| | ||
Sbjct 273944 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 273885
Query 319554 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGC 319613
|||| | ||||| | || | |||||||| || ||||| || || || | | ||
Sbjct 273884 CCACTTGACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGTAGCACGTCGGC 273825
Query 319614 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667
|| | ||||| || || || || ||||| ||||| ||||| || ||||| ||
Sbjct 273824 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGATAG 273771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057822197401790
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