Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq58 154 3e-32 seq91 105 1e-17 seq45 84.2 5e-11 >seq58 Length=769140 Score = 154 bits (170), Expect = 3e-32 Identities = 187/255 (73%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 230385 AATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG 230444 |||||| || || || || | | ||| |||||||||| || ||| | || || Sbjct 628252 AATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 628311 Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| | ||||||||||| || ||| ||||||||||| ||||| ||||||||| | Sbjct 628312 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 628371 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | || || || || ||||||| |||||||| | | |||||||||| || ||||| Sbjct 628372 GCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGA 628431 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 | ||| ||||| || ||||||||||||||||| |||||||| | ||||| |||| Sbjct 628432 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAA 628491 Query 230625 GCCTGGTGTGATGAA 230639 | ||||||| ||||| Sbjct 628492 GGCTGGTGTCATGAA 628506 >seq91 Length=103379 Score = 105 bits (116), Expect = 1e-17 Identities = 391/601 (65%), Gaps = 24/601 (4%) Strand=Plus/Minus Query 319013 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 319072 ||||||| ||||| |||| || ||| |||| ||||| | ||||||||| ||| | Sbjct 16794 AACGCCACTGGATGTACTCCGACGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAGG 16735 Query 319073 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGG 319132 | ||||| | |||||||| ||| || || |||| ||| |||| ||||| Sbjct 16734 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 16675 Query 319133 CTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCA 319192 ||| | |||||| ||||| || ||||| || || || || ||||| ||| | Sbjct 16674 GGACCAGCTCTCCCGTCAGCACGTTGATGAGAGTCGACTTTCCGGCTCCGTTGGGGCCAA 16615 Query 319193 CCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 319252 ||| | || | ||| | || || |||| | | | | ||| | || Sbjct 16614 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 16555 Query 319253 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 319311 || || || |||| ||| | || | ||||| || ||||| | |||| | Sbjct 16554 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 16496 Query 319312 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 319371 ||| |||||||||||| |||||||||||||| | || ||| || | ||| Sbjct 16495 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCCCCAAGC 16436 Query 319372 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 319428 |||||||| | || || |||| | ||| |||||||||| ||| || |||||| Sbjct 16435 TCGTAGTAAGACTTGGCCGA--CGGG-CACTTGCGCACGAACTCGCGCAGGTTACCCTTG 16379 Query 319429 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 319487 || ||| ||||| | | | ||||| ||||| || | | | ||| || |||||| Sbjct 16378 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 16323 Query 319488 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 319543 ||| || |||||||| ||||| || | |||| || | ||| ||| ||||||| Sbjct 16322 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 16270 Query 319544 ATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCA 319603 | || | |||| | ||||| |||| | ||||||||| |||||||| || |||| Sbjct 16269 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 16210 Query 319604 G 319604 | Sbjct 16209 G 16209 >seq45 Length=537551 Score = 84.2 bits (92), Expect = 5e-11 Identities = 195/294 (66%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 319374 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 319433 |||||| ||| | ||||| ||| ||| ||||| | | ||| || || |||| Sbjct 274064 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCAGCCAGGTTGCCGCGGTACAC 274005 Query 319434 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 319493 ||||| ||| || ||||| ||| || |||| || ||||||||||| || Sbjct 274004 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 273945 Query 319494 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAA 319553 ||||||||| ||||| |||| | | | ||| || || ||||||| | || Sbjct 273944 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 273885 Query 319554 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGC 319613 |||| | ||||| | || | |||||||| || ||||| || || || | | || Sbjct 273884 CCACTTGACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGTAGCACGTCGGC 273825 Query 319614 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 || | ||||| || || || || ||||| ||||| ||||| || ||||| || Sbjct 273824 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGATAG 273771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822197401790