Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq53 149 7e-31 >seq53 Length=1555449 Score = 149 bits (164), Expect = 7e-31 Identities = 276/402 (69%), Gaps = 10/402 (2%) Strand=Plus/Plus Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 |||||||||||| | | |||||| |||||||| ||||| | || |||||| Sbjct 193842 ACGTAGAACTGGGCAAACATGTGGCACGGCGGCAGCGCCATCTTCTTGATATCGGCCGGG 193901 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATC 145986 ||||| || | ||||| | | | || ||| ||||| | | || | || Sbjct 193902 TTCCACGCCGAGAGGATCA---TGCGGCGGTCGTACGGGTTGGTGCGCAGCTTCTGGATG 193958 Query 145987 AGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCG 146046 | || || |||||| |||||||| || || || || || | ||| |||||| || Sbjct 193959 ATTTCGGCGATCTGGTCGACGCCCTGTCCGGTATAGTCGGTTTTCGCGTCGACGTACTCG 194018 Query 146047 GCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGC 146106 || || ||||| | ||||||||| ||||| || || |||| ||| ||| |||| ||| Sbjct 194019 GCACCAAAGTGGCGCCACTGGAAGCCGTACACCGGGCCCAAGTCGCCGACTTCCCGGTGG 194078 Query 146107 CCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC- 146165 ||||| ||| | | | ||||||| || || || |||||| ||||||||||||||||||| Sbjct 194079 CCCAGGCCGACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCA 194138 Query 146166 -CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGA 146224 | |||| ||| || ||| ||| || ||| |||||||||||||| ||| Sbjct 194139 ACGTCGC--TCAGCGCAAGCGAGGACGTATTGGCCTCGATAAACCAGAGCAGCTCGACGA 194196 Query 146225 GGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 || | | ||| || | |||||| |||||||| |||| Sbjct 194197 TGATGGCTCGGGTGAATACGCGCTTGGTCGTCAGCAGCGGGA 194238 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 ||||||| ||||| || || | ||||| || ||| || || ||||| |||| || || Sbjct 193562 CAGCTGGGTCTTCAAGGCATCGATGTGGTCGATGTACACATGGGCGTCGCCCATCACATG 193621 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||| | |||||| | | | | | |||||| | ||||| ||||| |||| ||| Sbjct 193622 AGTGAGGGTTCCGGGCACCAAGTCGCACACGTGGGCAATCATGTGCGTCAGAAGGGCGTA 193681 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 |||||| |||||||| ||||| ||||| |||||||| | || ||||||||||||||||| Sbjct 193682 GCTGGCAATGTTGAACGGCACACCCAGACCCATGTCGCAGGACCGCTGGTACAGCTGGCA 193741 Query 145851 G 145851 | Sbjct 193742 G 193742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590075818997320