Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq101 113 4e-20 seq89 91.5 1e-13 >seq101 Length=737149 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| ||||||||||| || ||||| ||||||| | Sbjct 590216 CCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 590157 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || || | || || | |||||| ||| ||| Sbjct 590156 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 590097 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| ||||| | | ||| ||||| | ||| Sbjct 590096 ATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACC 590037 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || ||||| || || ||||| Sbjct 590036 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || ||||| ||||| | |||||| || | ||| Sbjct 589973 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 589914 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || | |||||| ||| || | ||| ||||| || Sbjct 589913 TCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCC 589854 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| |||||| | |||| || | ||| |||||| Sbjct 589853 TGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTC 589794 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || ||||| || || ||||| Sbjct 589793 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||||| ||||| || ||||| | Sbjct 589760 CCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 589701 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| ||||| || | || || | ||| |||||| ||| Sbjct 589700 AGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 589641 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| |||||| | |||| Sbjct 589640 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACC 589581 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| || ||||| ||||| Sbjct 589580 TCGAGGGTGATAGTCTTTCCGGT 589558 >seq89 Length=539979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 38672 AACCAGTTTAACGCCGCCGACTCGCCGTACCGCGTGCTGCTCATGTCCATCAAGTGCGGC 38731 ||| |||| |||| || || || ||||| ||||||||| || ||| || |||| Sbjct 514491 AACAAGTTCAACGGCG---ACCCGTCGTACGACGTGCTGCTGCTGACCACCAGCGTCGGC 514547 Query 38732 GGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGGAAC 38791 ||| | || ||||||||||| |||| | || | ||| | | |||| |||||||| Sbjct 514548 GGCCTCGGCCTGAACCTGACGGGCGCCGACACGGTGATCTTCGTCGAGCACGACTGGAAC 514607 Query 38792 CCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAG 38845 ||||| | || |||||||| ||||| ||||||||| |||||||| ||| Sbjct 514608 CCGCAGAAGGACCTGCAGGCCATGGACCGGGCCCACCGCATCGGCCAGAAGAAG 514661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258515544228