Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq58 437 9e-118 seq101 123 3e-23 seq94 109 6e-19 seq79 87.8 2e-12 >seq58 Length=769140 Score = 437 bits (484), Expect = 9e-118 Identities = 594/809 (73%), Gaps = 27/809 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | ||||||| | |||||| Sbjct 627644 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 627703 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | |||||| | ||| ||||||| ||||||| |||||| | Sbjct 627704 TCCAAGGATATCCATGACTGGAACAACCGCCTGAACGATGACGAGCGTTTCTTCATCTCG 627763 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| |||||||| |||||||| ||||||||||| |||||||||||| Sbjct 627764 CACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGT 627823 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | | ||||||||||| | ||||| || |||||||||||||| |||||| || Sbjct 627824 TTCAGCGCCG-AGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 627882 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || ||| ||||| ||||| ||| | | || || Sbjct 627883 GGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAGCCCT- 627941 Query 116928 CGGAGGAGAAGCTCCGTT--TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985 || || |||| ||| | || |||||||| || || || || ||| || |||| Sbjct 627942 CGCAGC----GCTC-GTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAA 627996 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045 |||||| ||||| | ||||||||| | || ||| | ||| |||| |||||||||| Sbjct 627997 GGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTCGTCCTACGGCCAGCGCCTGGT 628056 Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTT-TTCGG-GCAGTTTCGCCGCCATATTTTGG 117103 ||||| || |||||||||||| ||||||| ||| || | ||| || || || ||| Sbjct 628057 TGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCG--ATCTTCTGG 628114 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||| |||||| | |||||||||||||| ||| ||||||||| ||||| | ||| Sbjct 628115 GTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGAC 628174 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 ||||||||||| |||||| ||||| |||| ||| || | ||| || || ||| Sbjct 628175 GAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCTCAAGCACCGCCCCAGC 628234 Query 117224 GCGG-CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 || || ||| || ||| ||||||| || || |||||||||||| ||| |||| Sbjct 628235 AAGGACGTCATCCAGAGA-ATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCAC 628293 Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340 ||| || ||||| |||| |||||||| | || || | | |||| ||| |||||| Sbjct 628294 CGAGGCTCTGCC-CTGCGCCCTGCTGGGCATGAA-CGCCACCCTGATGAAGCAGTACATC 628351 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||||||| | |||||| ||| || | | || ||| ||||| | || Sbjct 628352 GAGTTCGTCGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCACC 628411 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| | ||||| ||| | |||||| Sbjct 628412 AACCCCTTTGACTTCATGGAGAACATCTC 628440 >seq101 Length=737149 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| | | Sbjct 589990 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 590049 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | || || |||||||||||| |||| || Sbjct 590050 GATACCATCGACAACG-TGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGATCA 590108 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || || | |||||||| |||||||| Sbjct 590109 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGTCGGACTACAA 590168 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| ||||| | ||| | ||| Sbjct 590169 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCCGC 590205 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || || || | || || ||| || | Sbjct 590218 ATGCAGATCTTCGTGAAGACTCTGACGGGAAAGACGATTACGTTGGAAGTGGAATCCTCG 590277 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| || || |||||||||||| ||||||| Sbjct 590278 GATACCATTGATAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCA 590336 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | ||||| || ||||||||| Sbjct 590337 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAA 590396 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||| || || || || | ||| || | || ||| Sbjct 590397 CATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGC 590445 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | | Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || || | || || |||||||| || |||| || Sbjct 589822 GATACTATCGATAACG-TCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCA 589880 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | |||||||| |||||||| Sbjct 589881 GCAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAA 589940 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||| |||| ||||| Sbjct 589941 CATCCAGAAAGAGTCCACCCTGCA 589964 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || || |||||| |||| || || | | || | | | |||| ||||| Sbjct 589556 TCACCGGAAAGACTATCACCCTCGAGGTGGAGTCTTCGGATACTATCGACAACG-TCAAG 589614 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||||||| ||||||| || || || |||| ||| ||| Sbjct 589615 TCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTCGCTGGC 589674 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || || ||| ||||||||| || ||||||||| |||| || Sbjct 589675 AAGCAGCTTGAGGACGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTT 589734 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || | ||| | | ||||| Sbjct 589735 CATCTCGTCCTCCGCCTCCGCGGCGG 589760 >seq94 Length=69539 Score = 109 bits (120), Expect = 6e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || |||||| | || || || || | Sbjct 45639 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 45580 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || || | ||||| |||||||||||| ||||||| Sbjct 45579 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAA 45520 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || ||||| ||||| || || | |||||||| |||||||||| Sbjct 45519 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 45460 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 45459 ATCCAGAAGG 45450 >seq79 Length=2610973 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||| || || || |||||| | || || || | | |||| | | Sbjct 579318 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 579377 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| ||||||| || || || Sbjct 579378 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 579436 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || | || ||||| ||||| || || | || || || ||||||||||||||||| Sbjct 579437 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 579496 Query 40878 GG 40879 || Sbjct 579497 GG 579498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218343448080