Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq101 143 2e-29
seq94 87.8 2e-12
seq79 84.2 2e-11
>seq101
Length=737149
Score = 143 bits (158), Expect = 2e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || |||| | | ||||||||| | || ||||| || || |||||||| ||
Sbjct 590218 TACCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 590159
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| ||||| |||||||||||| ||||||||| ||||||||||||||||||| || |
Sbjct 590158 ACAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGG 590099
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||||||||| || || || || || | |||| ||| |||| |||||
Sbjct 590098 GGATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGA 590039
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || ||||| ||||| || || || |||||||||||
Sbjct 590038 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || |||||||| || || ||||| ||||||
Sbjct 589971 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTC 589912
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || ||||| |||| || ||||||||||| ||||| ||||||||||| ||
Sbjct 589911 AAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTG 589852
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| || |||| ||| ||||||| ||| | || ||
Sbjct 589851 GATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTCTT 589792
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| || || || || || ||||||||
Sbjct 589791 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||| || || |||||||| ||| | |||||| |||||||
Sbjct 590426 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 590367
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| | || || |||||||| || || || ||||||||||| || |
Sbjct 590366 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 590307
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | ||| |||| | || || || | || | ||| ||
Sbjct 590306 ATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTT 590247
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||||||| || || || ||||||||
Sbjct 590246 CCCGTCAGAGTCTTCACGAAGATCTGCAT 590218
>seq94
Length=69539
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| |||||| ||||| || ||||| | ||
Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| ||||| || || || || |||||||||||||| || || || || | |||
Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| || |||| | ||| ||||| | ||| | || ||||| || || || || || |||
Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631
Query 118731 ATCTGCAT 118738
||||||||
Sbjct 45632 ATCTGCAT 45639
>seq79
Length=2610973
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| || || ||| || |||||| ||||| || ||||| | ||
Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|||||||| || || || || |||||||||||||| || || || || | |||
Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| |||||||| ||| ||||| | ||| | || || ||||| ||||| || || ||
Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829696788036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |