Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq101 98.7 1e-15 >seq101 Length=737149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | ||||| || | || || |||||||| ||| Sbjct 590414 GTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCA 590355 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || || ||||||||||| | || | || |||||| ||| ||| | || | || Sbjct 590354 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC-TGAATCTTCGACTT 590296 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | | | | || || |||||||| || | ||| || || || ||||| || || Sbjct 590295 CACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTTCCCGTCAGAGT 590236 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 590235 CTTCACGAAGATCTGCAT 590218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| || | ||||| || |||| || |||||||| |||||||| Sbjct 589725 CTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAA 589666 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || ||||| ||||| | || | || |||||||||| ||| || Sbjct 589665 GATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 589618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816649353240