Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq35 122 2e-22 seq52 116 8e-21 >seq35 Length=991205 Score = 122 bits (134), Expect = 2e-22 Identities = 269/401 (67%), Gaps = 28/401 (7%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| || || ||||| |||||||| || |||||||| ||||| ||| Sbjct 739871 TGCTCTTCTACGGCCCCCCGGGAACCGGCAAGACATCGACCATCCTCGCGCTCGCCAAGG 739812 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAG---CGCGTGCTCGAGCTGAACGCTTCTGACG 254127 || | ||| || || ||| | || |||||||||||||||||||| || |||| Sbjct 739811 AGCTCTACGGCCCGGAGA---TGATAAAGTCCCGCGTGCTCGAGCTGAACGCCTCCGACG 739755 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAA-GACTTTCTCCA-----AGATGTCGA 254181 | ||||| | |||| ||||| || |||| ||||| || || || | | Sbjct 739754 AGCGCGGCATCTCGATCGTGCGCGAAAAAGTCAAAGACTTCGCCCGCATGCAGCTGACCA 739695 Query 254182 TTTCGTCG------TTCCA--------ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCT 254227 || || | ||| ||||| || ||||| |||||| || | ||||| Sbjct 739694 ACCCGCCGCCGCACTACCAGGACCGCTACCCG--TGCCCGCCGTTCAAGATCATCATCCT 739637 Query 254228 GGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGAC 254287 |||||||| ||| | ||||| ||||| ||| |||||| ||||| || |||||||| Sbjct 739636 CGACGAGGCCGACTCGATGACCCAGGACGCCCAGAGCGCCCTACGCCGCACCATGGAGAC 739577 Query 254288 GCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCC 254347 || | | || || || ||||| | ||||||||||| | ||||||| || Sbjct 739576 CTACAGCAAAATCACCCGCTTCTGCCTCATCTGCAACTACGTCACCCGCATCATCGATCC 739517 Query 254348 GCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 |||||| || ||| |||||| || |||| | ||||| Sbjct 739516 GCTGGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 739476 >seq52 Length=911667 Score = 116 bits (128), Expect = 8e-21 Identities = 275/412 (67%), Gaps = 24/412 (6%) Strand=Plus/Minus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| || ||| |||| | |||| || |||||||| |||||||| || || ||||| || Sbjct 757916 CCTGCCCCATCTGCTGCTGTACGGGCCCCCCGGAACCGGCAAGACCTCGACGATCCTTGC 757857 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 ||| || || | | | |||| | |||||| | || ||||||||||||||||| Sbjct 757856 GCTTGCGCGCCGCATCTACGGCGCCGCCAACATGCGCCAGATGGTGCTCGAGCTGAACGC 757797 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT---CTCCA---- 254172 || ||||| ||||| | ||||| || ||||| |||||||||| || || | Sbjct 757796 CTCCGACGACCGCGGCATCGACGTGGTGCGCGAGCAGATCAAGACCTTTGCGTCGACCCG 757737 Query 254173 --AGA---TGTCGAT------TTCGTCGTTC-CAAC--CCGGCTGTCCGC---CTTTCAA 254215 ||| | ||||| |||| || | | | ||||| | ||| | | ||| Sbjct 757736 GCAGATCTTCTCGATGGGCGCTTCGGCGGGCGCGTCCGCCGGCGGCGCGCCCACCTACAA 757677 Query 254216 GCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCG 254275 |||| | ||||| |||||||| ||| ||||||| | ||||||| ||||| ||||| Sbjct 757676 GCTCATCATCCTCGACGAGGCCGACGCCATGACCAACACCGCGCAGATGGCCCTGCGCCG 757617 Query 254276 AACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAA 254335 | ||||||| | || ||| ||||| || ||| | | |||||||| || Sbjct 757616 TATCATGGAGAAGTACACCGCCAACACGCGCTTCTGCGTCATCGCCAACTACGCCCACAA 757557 Query 254336 GATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTC 254387 | || | || ||||| || || ||| | ||| || |||||| | ||| Sbjct 757556 GCTCTCCCCCGCGCTGCTGTCGCGCTGCACGCGGTTCCGCTTCAGCCCGCTC 757505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764570234944