Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq60 354 7e-93 seq58 199 4e-46 seq101 82.4 7e-11 >seq60 Length=1285956 Score = 354 bits (392), Expect = 7e-93 Identities = 1222/1887 (65%), Gaps = 36/1887 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 |||||| || || ||||| || |||| || || | | ||| || || || ||||||| Sbjct 692454 CTTGTCAACAGTGAACTGAATAGGCGCC-GCAGCAGCCTGGGTACGGAGGTAGTACATGC 692512 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | ||||| ||||| | |||||| || || || || || | || || | | Sbjct 692513 CGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGG 692572 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | ||||| | || | ||||| ||| || || || || || || ||||| | Sbjct 692573 GGTCCTTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGGTCGGCTG 692632 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | | | || ||| || |||||||| || ||||||||||| | |||| | Sbjct 692633 CCATCTGCACAACAGTGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGT 692692 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || | || |||||| || ||||| | | ||||| || || | Sbjct 692693 CAGCAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCA 692752 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACT 22462 ||| || ||||| || | | || | ||| || || | |||| || ||||| Sbjct 692753 TCGAGTCCGACCACAGGCCAAGGTCGACGAGATCGCGGAGCA-ACCACGGGTTGACCACC 692811 Query 22463 TGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || ||||| || | |||| || ||||| ||||| |||||||| ||| |||| || || | Sbjct 692812 TGGAACTCTCCAG-CAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAGCA 692870 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| || || ||||| | ||| || || ||||| || |||| ||| || Sbjct 692871 CTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACT 692930 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC 22638 ||| | | ||||| |||| | | ||| || || | ||||||||| || || Sbjct 692931 GTTGCGAACACCGTGAAGCTTGA---TCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTC 692987 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTG 22696 || ||| | ||||| |||||| || | |||| | || | | || || || | Sbjct 692988 GGTGGGCTTGACATT---CCACATGTCAAACTGCAGGATACCCTGAGAGACG--GGAGAG 693042 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 || || || || ||| | || | | ||| | || | ||| || || Sbjct 693043 CCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCA 693102 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 ||| || || ||||||||||| | || ||||| || || || || || | Sbjct 693103 GCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAG 693162 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 ||||| |||| | ||| || || |||| ||||||||| || | |||||| || ||| Sbjct 693163 GGCATGCGCAGAGCGAGGAAAGCATCAGCCAGACCCTGAACACCAACACCGATGGGGCGG 693222 Query 22877 TTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 | || || || |||| |||||||| || || || ||| || | Sbjct 693223 TGGCGCATGTTG----CTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGAT 693278 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 | ||||| ||| | | || | | || | |||||||| || || Sbjct 693279 GCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACAC 693338 Query 22993 GCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049 |||| ||||| ||||| | | | |||| ||||| || ||||| || ||||| Sbjct 693339 GCCCTTGTTGTAGTCAACATAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACACAGCCAC 693398 Query 23050 CTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||| || ||| || |||||| | || || || || || ||| | || || Sbjct 693399 CTCATCG--GGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTA 693456 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || |||||||||| || || || || |||||||| |||||| | || || Sbjct 693457 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCATGAAGGGGTTG 693516 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC 23227 || |||||| ||| | ||||| ||| || ||||| ||||||| | | ||| Sbjct 693517 CCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTTGATG-GTCTT 693575 Query 23228 ACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACA 23286 || | | || || |||||||||| | ||||| || || || || | ||||| || Sbjct 693576 GCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCA 693635 Query 23287 GTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAAC 23346 |||||| || ||||| | | | || ||||| ||| ||||| | || || || || Sbjct 693636 GTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGAC 693695 Query 23347 GCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTC 23406 || |||| || ||||| || ||||| ||||| ||||| || | |||||| ||||| Sbjct 693696 ACGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTC 693755 Query 23407 CTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTC 23466 ||| || || |||||| || ||||| || || ||||| || || ||||||||||| Sbjct 693756 CTCCTTTCCATGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTC 693815 Query 23467 GAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGT 23526 ||| || | |||||| ||||| || | ||| ||||| ||||| || || || || || || Sbjct 693816 GAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGT 693875 Query 23527 GTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCAC 23586 ||||||| |||||| ||||| || | || ||| ||||||| ||| || || | Sbjct 693876 GTTGTTGAACACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAAT 693935 Query 23587 ACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646 | ||||| | || || | ||| || | || ||| ||||| || || || || Sbjct 693936 ATAAGAACCAGTAGCACGGATACGGTGGACATTGAGACCAATGCCGCCAGCCATCTTGGA 693995 Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGC 23706 ||||| ||||| || || ||||| ||||| ||||| |||||||| || || | | Sbjct 693996 GATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATC 694055 Query 23707 GACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCT 23766 |||| ||| ||||| || | || || | || ||| | || ||| || || ||| Sbjct 694056 AACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGA 694115 Query 23767 GGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC 23826 ||| || || ||| | | ||||| | ||||| || || ||| || || | || Sbjct 694116 GGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTT 694175 Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC 23886 ||||| || || | || || ||||| ||||||| || || | |||||| | Sbjct 694176 GTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTT 694235 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 ||||| || |||| ||| || || || | || || || || ||||| || | ||||| Sbjct 694236 GCCGTCAAGCTTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTT 694295 Query 23947 AAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| || |||| || |||||||| Sbjct 694296 GAAGTCCCGGTCGTAGACAATGGCCGA 694322 >seq58 Length=769140 Score = 199 bits (220), Expect = 4e-46 Identities = 568/861 (66%), Gaps = 29/861 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || ||||| ||||| | ||| || | |||||| Sbjct 627644 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 627703 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||| | || ||| | || | || || ||| | || || Sbjct 627704 TCCAAGGATATCCATGACTGGAACAACCGCCTGAACGATGACGAGCGTTTCTTCATCTCG 627763 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || |||||||| || || || ||||| |||||||| ||||||| | Sbjct 627764 CACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCG- 627822 Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| || ||||| ||| | ||||| | ||||| ||||| || || | | Sbjct 627823 -TTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 627881 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAA 57862 | || ||| | || || || | || ||||| ||||| || || ||| | ||||| | Sbjct 627882 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAGCCCT 627941 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 || | | ||| || |||||||| || || || || ||| ||| ||||||||| Sbjct 627942 CGCAGCGCT-CGTTC-CTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAAGGC 627999 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCG---AGAGGCTAAT 57979 || ||| | ||| ||||| | | || || ||| | || || | || | Sbjct 628000 CGACTGGGCCATCCGCTGGATCCAG---GACAAGGAGTCGTCCTACGGCCAGCGCCTGGT 628056 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || ||||||||||| || || ||||| || ||| || | || || ||| | Sbjct 628057 TGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGGT 628116 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||| |||||||||||||||| || ||||||| |||| ||||| ||||| Sbjct 628117 CAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGA 628176 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC- 58158 |||||| || || || || || ||||| | | ||| ||| |||| |||| | | Sbjct 628177 GGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCAC---CTCAA-GCACCGCCCCA 628232 Query 58159 ---GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 ||| |||| | || |||||||| || || || ||||| | ||||| ||| Sbjct 628233 GCAAGGACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCA 628292 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 |||| || || || ||| |||| || |||||| ||||| ||||||| | Sbjct 628293 CCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCG 628352 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAA 58333 |||| || |||||| | || || ||| || | |||| || ||||| | | Sbjct 628353 AGTTCGTCGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGT--GTACAAGGCCAC 628410 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 || || ||||| || ||| | |||||||| | |||||||| ||||| ||||| || Sbjct 628411 CAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAA 628470 Query 58394 aaaaGTTAGCGAATATCAAAA 58414 ||| |||| || || || Sbjct 628471 GCGTGTTGGCGACTACCAGAA 628491 >seq101 Length=737149 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || || || |||||| |||| || || | || || | | |||| | ||||| | Sbjct 589558 ACCGGAAAGACTATCACCCTCGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 589617 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| ||| | || || ||||| ||||| || || ||||||||||| Sbjct 589618 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTCGCTGGCAAG 589677 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || ||| ||| | ||| || || ||||| || || || || |||||| Sbjct 589678 CAGCTTGAGGACGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAT 589737 Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421 || || || | || | ||||||| Sbjct 589738 CTCGTCCTCCGCCTCCGCGGCGGTA 589762 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| ||||| || ||||| | || || || |||| Sbjct 589990 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 590049 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||| ||||| ||| | || || || ||| Sbjct 590050 GATACCATCGACAACGTGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGATCAG 590109 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || |||||||| || ||| | || || Sbjct 590110 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGA 590144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765658913360