Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq60 111 3e-19 seq58 104 5e-17 >seq60 Length=1285956 Score = 111 bits (122), Expect = 3e-19 Identities = 418/649 (64%), Gaps = 10/649 (2%) Strand=Plus/Plus Query 94399 CCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGG 94458 || |||||||| || |||||||||| |||| ||||| ||||| | | ||||| ||| Sbjct 693586 CCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGA 693645 Query 94459 CCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCC 94515 || |||||||||| |||||||||||| | ||| || | |||| || | || | Sbjct 693646 CCGGGGCACTCGTTGGGGCACATCAGAGTCCA---CTCGGCGTTCTTCTCGACACGCTTC 693702 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||||||||||| | ||| | ||| |||| | ||| || | | | || || || Sbjct 693703 ATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTT 693762 Query 94576 CCGGCATTCTTTCTGCAG-TCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATA 94634 || ||||| | |||| || || || || ||| || ||||| | ||| Sbjct 693763 CCATGGTTCTTGC-GCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATA 693821 Query 94635 GATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTT 94694 |||||| || || | ||||| || |||||| ||| | | | | | ||| Sbjct 693822 GATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTT 693881 Query 94695 AAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCT 94754 || | | | || | | |||| |||| | || ||| | | | ||| Sbjct 693882 GAACACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGA 693941 Query 94755 TCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGAT 94814 || | || | | | || | | || || | || ||||| |||||||||| || Sbjct 693942 ACCAGTAGCACGGATACGGTGGACATTGAGACCAATGCCGCCAGCCATCTTGGAGATCAT 694001 Query 94815 TGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAG 94874 || ||| || || ||||| |||||||||||||| ||||| | | | | || Sbjct 694002 GGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAG 694061 Query 94875 GAAGCACGAGGAAAGTTGGG-GTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCAT 94933 ||||||||| || || |||| || | || ||| || || || |||||||| |||| Sbjct 694062 GAAGCACGACGAGAGCTGGGCCTGCG-GGGTACCAGCGTTGAAGAGGGTGGGGGAGGCAT 694120 Query 94934 GGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATC 94993 |||| || | | || ||||| | | || || |||||||| | || || || Sbjct 694121 GGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTC 694180 Query 94994 CGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 | ||||| ||||| |||||||| ||||||| ||| |||||||| || Sbjct 694181 CCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGAC 694229 >seq58 Length=769140 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| ||| | || || |||||| Sbjct 628055 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGG 628114 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || || |||| || || |||| |||||| ||| | || || | ||| Sbjct 628115 GTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGAC 628174 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || ||||| || |||||| || ||| |||| || Sbjct 628175 GAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTT 628209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582313687015