Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq60 111 3e-19
seq58 104 5e-17
>seq60
Length=1285956
Score = 111 bits (122), Expect = 3e-19
Identities = 418/649 (64%), Gaps = 10/649 (2%)
Strand=Plus/Plus
Query 94399 CCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGG 94458
|| |||||||| || |||||||||| |||| ||||| ||||| | | ||||| |||
Sbjct 693586 CCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGA 693645
Query 94459 CCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCC 94515
|| |||||||||| |||||||||||| | ||| || | |||| || | || |
Sbjct 693646 CCGGGGCACTCGTTGGGGCACATCAGAGTCCA---CTCGGCGTTCTTCTCGACACGCTTC 693702
Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575
||||||||||||| | ||| | ||| |||| | ||| || | | | || || ||
Sbjct 693703 ATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTT 693762
Query 94576 CCGGCATTCTTTCTGCAG-TCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATA 94634
|| ||||| | |||| || || || || ||| || ||||| | |||
Sbjct 693763 CCATGGTTCTTGC-GCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATA 693821
Query 94635 GATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTT 94694
|||||| || || | ||||| || |||||| ||| | | | | | |||
Sbjct 693822 GATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTT 693881
Query 94695 AAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCT 94754
|| | | | || | | |||| |||| | || ||| | | | |||
Sbjct 693882 GAACACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGA 693941
Query 94755 TCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGAT 94814
|| | || | | | || | | || || | || ||||| |||||||||| ||
Sbjct 693942 ACCAGTAGCACGGATACGGTGGACATTGAGACCAATGCCGCCAGCCATCTTGGAGATCAT 694001
Query 94815 TGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAG 94874
|| ||| || || ||||| |||||||||||||| ||||| | | | | ||
Sbjct 694002 GGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAG 694061
Query 94875 GAAGCACGAGGAAAGTTGGG-GTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCAT 94933
||||||||| || || |||| || | || ||| || || || |||||||| ||||
Sbjct 694062 GAAGCACGACGAGAGCTGGGCCTGCG-GGGTACCAGCGTTGAAGAGGGTGGGGGAGGCAT 694120
Query 94934 GGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATC 94993
|||| || | | || ||||| | | || || |||||||| | || || ||
Sbjct 694121 GGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTC 694180
Query 94994 CGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
| ||||| ||||| |||||||| ||||||| ||| |||||||| ||
Sbjct 694181 CCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGAC 694229
>seq58
Length=769140
Score = 104 bits (114), Expect = 5e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||| || || || || |||||||| || ||||| ||| | || || ||||||
Sbjct 628055 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGG 628114
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || || |||| || || |||| |||||| ||| | || || | |||
Sbjct 628115 GTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGAC 628174
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
|| ||||| || |||||| || ||| |||| ||
Sbjct 628175 GAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTT 628209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989582313687015
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |