Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq60 150 2e-31
seq58 93.3 5e-14
>seq60
Length=1285956
Score = 150 bits (166), Expect = 2e-31
Identities = 448/686 (65%), Gaps = 14/686 (2%)
Strand=Plus/Plus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||||| | |||||| ||| | || || || ||||| ||||||||||| |||
Sbjct 693661 GGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATC 693720
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
|| ||||| | || | |||||| | | ||||| ||||| ||||| |||
Sbjct 693721 CACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGA 693780
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
|| | |||| | | | ||| | |||||||| || | || ||||| | | || ||
Sbjct 693781 TCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGG 693840
Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473
|| ||||| || ||||| || | || | |||||||| || | |||| | ||| ||
Sbjct 693841 CGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGG 693900
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA--T 63531
|| ||||| || || | |||||||| |||| ||||| ||| | ||||| |||
Sbjct 693901 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGG 693960
Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591
| |||| ||||| || || || ||||| || ||||| | ||||| || | |
Sbjct 693961 TGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 694018
Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651
|||||||||| || || ||||| ||||| | || | || || || || || | |
Sbjct 694019 TGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCT 694078
Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711
|| | | || || || || || | ||| || || || || || || | || |
Sbjct 694079 GGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGG 694138
Query 63712 AAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTATATCCCATTGATGAATTCCTAC 63766
| | | ||||| |||||||| ||| || | | |||| |||| || ||
Sbjct 694139 ACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCC-CAGATG----CCAAC 694193
Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826
|| |||||||| | ||||||||| || | || ||||| ||| || | || | ||
Sbjct 694194 AGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAG 694253
Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886
||| || |||| || || || ||||| || | ||| ||||| || ||||| |
Sbjct 694254 GTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCGTAGAC 694313
Query 63887 AATAACCGAATTGAGCTTATCCTTAT 63912
||| |||| | |||| |||||||
Sbjct 694314 AATGGCCGAGTCCAGCTCCTCCTTAT 694339
>seq58
Length=769140
Score = 93.3 bits (102), Expect = 5e-14
Identities = 171/246 (70%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| ||||| ||| ||||||||||||||| | || | ||||| || || || ||
Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| | ||| ||||| || | ||| || || || | ||| | ||| ||||||
Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33758
|| || || || || |||||||||| || | || || || || | | |||| ||
Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGG 628021
Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| | || ||||| ||||||||||| | || || || || || ||||| ||
Sbjct 628020 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 627962
Query 33818 AAAGAG 33823
|||||
Sbjct 627961 GAAGAG 627956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816552928240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |