Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq60 150 2e-31 seq58 93.3 5e-14 >seq60 Length=1285956 Score = 150 bits (166), Expect = 2e-31 Identities = 448/686 (65%), Gaps = 14/686 (2%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| | |||||| ||| | || || || ||||| ||||||||||| ||| Sbjct 693661 GGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATC 693720 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| | || | |||||| | | ||||| ||||| ||||| ||| Sbjct 693721 CACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGA 693780 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || | |||| | | | ||| | |||||||| || | || ||||| | | || || Sbjct 693781 TCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGG 693840 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | || | |||||||| || | |||| | ||| || Sbjct 693841 CGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGG 693900 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA--T 63531 || ||||| || || | |||||||| |||| ||||| ||| | ||||| ||| Sbjct 693901 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGG 693960 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | |||| ||||| || || || ||||| || ||||| | ||||| || | | Sbjct 693961 TGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 694018 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 |||||||||| || || ||||| ||||| | || | || || || || || | | Sbjct 694019 TGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCT 694078 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 || | | || || || || || | ||| || || || || || || | || | Sbjct 694079 GGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGG 694138 Query 63712 AAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTATATCCCATTGATGAATTCCTAC 63766 | | | ||||| |||||||| ||| || | | |||| |||| || || Sbjct 694139 ACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCC-CAGATG----CCAAC 694193 Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826 || |||||||| | ||||||||| || | || ||||| ||| || | || | || Sbjct 694194 AGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAG 694253 Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886 ||| || |||| || || || ||||| || | ||| ||||| || ||||| | Sbjct 694254 GTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCGTAGAC 694313 Query 63887 AATAACCGAATTGAGCTTATCCTTAT 63912 ||| |||| | |||| ||||||| Sbjct 694314 AATGGCCGAGTCCAGCTCCTCCTTAT 694339 >seq58 Length=769140 Score = 93.3 bits (102), Expect = 5e-14 Identities = 171/246 (70%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||||||||||||| | || | ||||| || || || || Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| | ||| ||||| || | ||| || || || | ||| | ||| |||||| Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33758 || || || || || |||||||||| || | || || || || | | |||| || Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGG 628021 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| ||||||||||| | || || || || || ||||| || Sbjct 628020 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 627962 Query 33818 AAAGAG 33823 ||||| Sbjct 627961 GAAGAG 627956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816552928240