Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq58 91.5 1e-13 seq101 87.8 2e-12 >seq58 Length=769140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || ||||| | ||| || | ||||| | || || ||| | ||| | || ||||| Sbjct 628262 GATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGC 628321 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||||| ||| ||||| ||||||||||||| || || ||| | ||| || | Sbjct 628322 ATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTCGCT 628381 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 ||||| | ||| || || || ||||||||| || ||| | ||||| ||| Sbjct 628382 CTCGGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCG 628441 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 || | ||||| || ||||| ||||||| ||||| ||||| ||| Sbjct 628442 CTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTAC 628486 >seq101 Length=737149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||| || ||||| || || | Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||| || || |||||||| ||||| Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || || | | || | || || | | ||||||| Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||| | || || ||||| || |||||| Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 589761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063175293600