Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq60 172 8e-38 seq58 105 1e-17 >seq60 Length=1285956 Score = 172 bits (190), Expect = 8e-38 Identities = 462/701 (66%), Gaps = 14/701 (2%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| || ||||||| | |||||| | | | || || || ||||| Sbjct 693646 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATG 693705 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 ||||||||||| ||||| ||||| | || | |||||||| | |||||| ||||| Sbjct 693706 AAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCA 693765 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| ||||| | |||| | | | ||| | |||||||| || | || ||| Sbjct 693766 TGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATG 693825 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | || | |||||||| || | Sbjct 693826 GCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAAC 693885 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 |||| | ||| || || ||||||||||| || |||||||| |||| ||||| ||| Sbjct 693886 ACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCA 693945 Query 80191 CTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | ||||| ||| | |||| ||||| || || || ||||| || ||||| | | Sbjct 693946 GTAGCACGGATACGGTGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCATGG 694003 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 |||| || | || |||||||| ||||| ||||| ||||| | || | || || | Sbjct 694004 CGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGA 694063 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 | || || | ||| | || || || || || | ||| || || || || | Sbjct 694064 AGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGG 694123 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTATATCCCA 80423 | || | || |||| | ||||| |||||||| ||| || | | |||| Sbjct 694124 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCC- 694182 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 |||| || || || |||||||| | ||||||||| || | || || |||||| Sbjct 694183 CAGATG----CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCC 694238 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543 | | || | || |||||| |||| || || || ||||| || | ||| || Sbjct 694239 GTCAAGCTTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 694298 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 ||| || ||||| | ||| |||||| || | ||||||| Sbjct 694299 GTCCCGGTCGTAGACAATGGCCGAGTCCAGCTCCTCCTTAT 694339 >seq58 Length=769140 Score = 105 bits (116), Expect = 1e-17 Identities = 175/247 (71%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||||||||||||| | || || |||||||| || || || Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| | ||| ||||| || | ||| || || |||| || | || |||||| Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC--TGTCATG 50135 || || || || |||||||||||||| || | || || || || | | | |||| || Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGAC-GACTCCTTGTCCTG 628022 Query 50136 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | || ||||| ||||||||||| | || || || || || ||||| | Sbjct 628021 GATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGT 627963 Query 50195 TAAAGAG 50201 | ||||| Sbjct 627962 TGAAGAG 627956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267605878120