Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq60 172 8e-38
seq58 105 1e-17
>seq60
Length=1285956
Score = 172 bits (190), Expect = 8e-38
Identities = 462/701 (66%), Gaps = 14/701 (2%)
Strand=Plus/Plus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
|| || || |||| || ||||||| | |||||| | | | || || || |||||
Sbjct 693646 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATG 693705
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
||||||||||| ||||| ||||| | || | |||||||| | |||||| |||||
Sbjct 693706 AAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCA 693765
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
||||| ||||| | |||| | | | ||| | |||||||| || | || |||
Sbjct 693766 TGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATG 693825
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | || || || ||||| || ||||| || | || | |||||||| || |
Sbjct 693826 GCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAAC 693885
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|||| | ||| || || ||||||||||| || |||||||| |||| ||||| |||
Sbjct 693886 ACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCA 693945
Query 80191 CTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248
| ||||| ||| | |||| ||||| || || || ||||| || ||||| | |
Sbjct 693946 GTAGCACGGATACGGTGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCATGG 694003
Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308
|||| || | || |||||||| ||||| ||||| ||||| | || | || || |
Sbjct 694004 CGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGA 694063
Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368
| || || | ||| | || || || || || | ||| || || || || |
Sbjct 694064 AGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGG 694123
Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTATATCCCA 80423
| || | || |||| | ||||| |||||||| ||| || | | ||||
Sbjct 694124 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCC- 694182
Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483
|||| || || || |||||||| | ||||||||| || | || || ||||||
Sbjct 694183 CAGATG----CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCC 694238
Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543
| | || | || |||||| |||| || || || ||||| || | ||| ||
Sbjct 694239 GTCAAGCTTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 694298
Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584
||| || ||||| | ||| |||||| || | |||||||
Sbjct 694299 GTCCCGGTCGTAGACAATGGCCGAGTCCAGCTCCTCCTTAT 694339
>seq58
Length=769140
Score = 105 bits (116), Expect = 1e-17
Identities = 175/247 (71%), Gaps = 7/247 (3%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| ||| ||||||||||||||| | || || |||||||| || || ||
Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| | ||| ||||| || | ||| || || |||| || | || ||||||
Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC--TGTCATG 50135
|| || || || |||||||||||||| || | || || || || | | | |||| ||
Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGAC-GACTCCTTGTCCTG 628022
Query 50136 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194
||||| | || ||||| ||||||||||| | || || || || || ||||| |
Sbjct 628021 GATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGT 627963
Query 50195 TAAAGAG 50201
| |||||
Sbjct 627962 TGAAGAG 627956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718267605878120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |