Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq60 154 2e-32
seq58 87.8 2e-12
>seq60
Length=1285956
Score = 154 bits (170), Expect = 2e-32
Identities = 458/701 (65%), Gaps = 14/701 (2%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || || || || || ||||||| | |||||| | | | | || || |||||
Sbjct 693646 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATG 693705
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
||||||||||| ||||| ||||| | || | |||||||| | |||||| |||||
Sbjct 693706 AAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCA 693765
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| ||||| | |||| | | | ||| | |||||||| || | || |||
Sbjct 693766 TGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATG 693825
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || ||||| || ||||| || | || | |||||||| || |
Sbjct 693826 GCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAAC 693885
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|||| | ||| || || ||||||||||| | |||||||| |||| ||||| |||
Sbjct 693886 ACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCA 693945
Query 72274 CTGGCACGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
| ||||| ||| || |||| ||||| || || || ||||| || ||||| | |
Sbjct 693946 GTAGCACGGATACGGTGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCATGG 694003
Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391
|||| || | || |||||||| ||||| || || |||||| | || | || || |
Sbjct 694004 CGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGA 694063
Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451
| || || | ||| | || || || || || | ||| || || || || |
Sbjct 694064 AGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGG 694123
Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTATATCCCA 72506
| || | || |||| | ||||| |||||||| ||| || | | ||||
Sbjct 694124 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCC- 694182
Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566
|||| || || || |||||||| | ||| ||||| || | || || ||||||
Sbjct 694183 CAGATG----CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCC 694238
Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626
| | || | || ||| || |||| || || || ||||| || | ||| ||
Sbjct 694239 GTCAAGCTTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 694298
Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTAT 72667
||| || ||||| | ||| |||| | || | |||||||
Sbjct 694299 GTCCCGGTCGTAGACAATGGCCGAGTCCAGCTCCTCCTTAT 694339
>seq58
Length=769140
Score = 87.8 bits (96), Expect = 2e-12
Identities = 170/246 (69%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| ||| |||||||||||| || | || | |||||||| || || ||
Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| | ||| ||||| || | ||| || || |||| || | || ||||||
Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCAC--TGTCATGT 42241
|| || || || || |||||||||| || | || || || || | | |||| ||
Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGG 628021
Query 42242 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| | || ||||| ||||||||||| | || || || || || ||||| ||
Sbjct 628020 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 627962
Query 42301 AAAGAG 42306
|||||
Sbjct 627961 GAAGAG 627956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138084231080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |