Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq60 154 2e-32 seq58 87.8 2e-12 >seq60 Length=1285956 Score = 154 bits (170), Expect = 2e-32 Identities = 458/701 (65%), Gaps = 14/701 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||||| | |||||| | | | | || || ||||| Sbjct 693646 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATG 693705 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||||||||| ||||| ||||| | || | |||||||| | |||||| ||||| Sbjct 693706 AAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCA 693765 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| ||||| | |||| | | | ||| | |||||||| || | || ||| Sbjct 693766 TGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATG 693825 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | || | |||||||| || | Sbjct 693826 GCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAAC 693885 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| | ||| || || ||||||||||| | |||||||| |||| ||||| ||| Sbjct 693886 ACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCA 693945 Query 72274 CTGGCACGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 | ||||| ||| || |||| ||||| || || || ||||| || ||||| | | Sbjct 693946 GTAGCACGGATACGGTGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCATGG 694003 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 |||| || | || |||||||| ||||| || || |||||| | || | || || | Sbjct 694004 CGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGA 694063 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || || | ||| | || || || || || | ||| || || || || | Sbjct 694064 AGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGG 694123 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTATATCCCA 72506 | || | || |||| | ||||| |||||||| ||| || | | |||| Sbjct 694124 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCC- 694182 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 |||| || || || |||||||| | ||| ||||| || | || || |||||| Sbjct 694183 CAGATG----CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCC 694238 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 | | || | || ||| || |||| || || || ||||| || | ||| || Sbjct 694239 GTCAAGCTTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 694298 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTAT 72667 ||| || ||||| | ||| |||| | || | ||||||| Sbjct 694299 GTCCCGGTCGTAGACAATGGCCGAGTCCAGCTCCTCCTTAT 694339 >seq58 Length=769140 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/246 (69%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||||||||||| || | || | |||||||| || || || Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| | ||| ||||| || | ||| || || |||| || | || |||||| Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCAC--TGTCATGT 42241 || || || || || |||||||||| || | || || || || | | |||| || Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGG 628021 Query 42242 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | || ||||| ||||||||||| | || || || || || ||||| || Sbjct 628020 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 627962 Query 42301 AAAGAG 42306 ||||| Sbjct 627961 GAAGAG 627956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138084231080