Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq58 255 9e-63 seq60 178 2e-39 >seq58 Length=769140 Score = 255 bits (282), Expect = 9e-63 Identities = 573/852 (67%), Gaps = 39/852 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||||| ||| ||| |||| ||| Sbjct 627644 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 627703 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----AT 125134 |||||||| | | || ||| | | || ||| || ||| |||| |||| || Sbjct 627704 TCCAAGGATATCCATGACTGGAACAACCGCCTGAACGA---TGA-CGAGCGTTTCTTCAT 627759 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 ||||||||| | |||||||| |||| || || || || |||||||| || ||| | Sbjct 627760 CTCGCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGA 627819 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 || ||| ||| || | || |||| ||||| ||||| ||||| ||||| Sbjct 627820 GCGTTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCAT 627879 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | ||||| || ||||||| ||||| || || Sbjct 627880 GATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAGCC 627939 Query 125315 ---GCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 ||| || | | | | |||| ||||| || ||||| | || | || || || | Sbjct 627940 CTCGCAGCG----CTCGTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGA 627995 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || || |||||| | ||| | |||| || |||| | | | |||| Sbjct 627996 AGGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTCGTCCTACGGCCAGCGCCTGG 628055 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| |||||||||||||| ||| || || | ||||| ||| Sbjct 628056 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGG 628115 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| | |||||||| ||||| | |||||| | || || || |||| Sbjct 628116 TCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACG 628175 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGC 125609 |||| || ||| ||||| ||| || || || || || || | || | Sbjct 628176 AGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCT----------CAAGCAC 628225 Query 125610 AGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | ||||| | | | |||||| | || | |||||||||||| || || || Sbjct 628226 CGCCCCAGCAAGG---ACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATCGAGCAG 628282 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 ||||| | ||||| | || || | | || | ||||||||| || || ||| Sbjct 628283 GAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAG 628342 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATT 125783 ||||||| ||||| || || || || || ||| || | ||| || ||| | Sbjct 628343 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTCG---CTCTCGGCAACGAGAAGGTG 628399 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 ||||| |||| || |||||||| |||||| | ||| || || | || ||||||||| Sbjct 628400 TACAAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAAC 628459 Query 125844 TTTTTCGAGAAG 125855 || ||||||||| Sbjct 628460 TTCTTCGAGAAG 628471 >seq60 Length=1285956 Score = 178 bits (196), Expect = 2e-39 Identities = 343/498 (69%), Gaps = 6/498 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || ||||| | ||| |||| | || || |||||||| || Sbjct 693857 CAGGGTGGCAACAAGCGCCCCGGCGCCTTTGCCATCTATCTCGAGCCGTGGCACGCCGAT 693798 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || ||||||| ||| ||| || |||| || ||||| || Sbjct 693797 GTGTTCGAGTTCATGGATCTGCGCAAGAACCATGGAAAGGAGGAGGTCCGCGCCAGAGAT 693738 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| || || ||| | || ||| | ||||||||||| ||| | | | | | Sbjct 693737 TTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGCCGAG 693678 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || |||||||| |||| |||| ||||| ||||| Sbjct 693677 TGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGCGAGGAGTTC 693618 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | |||||| ||||| || || |||| | || | || | Sbjct 693617 GAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCA-TCAAGGCTC- 693560 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | |||||| | ||||||| ||||| || | || | ||| || | Sbjct 693559 AGAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGT 693500 Query 97234 ACAAGGA-TACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 ||||||| || || || ||||| |||||||| || |||| ||||| ||||| Sbjct 693499 ACAAGGACCACTGT-AACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCC 693441 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 || |||||||| || || | |||||| | |||| || ||| ||| || ||| ||| Sbjct 693440 AACCTGTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCTG 693381 Query 97353 GCATCGGTCAATCTGCCC 97370 || || || ||||||| Sbjct 693380 GCCTCCCTCGCTCTGCCC 693363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057967989080