Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq58 255 9e-63
seq60 178 2e-39
>seq58
Length=769140
Score = 255 bits (282), Expect = 9e-63
Identities = 573/852 (67%), Gaps = 39/852 (5%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| ||||||| || ||||||| ||| ||| |||| |||
Sbjct 627644 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 627703
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----AT 125134
|||||||| | | || ||| | | || ||| || ||| |||| |||| ||
Sbjct 627704 TCCAAGGATATCCATGACTGGAACAACCGCCTGAACGA---TGA-CGAGCGTTTCTTCAT 627759
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
||||||||| | |||||||| |||| || || || || |||||||| || ||| |
Sbjct 627760 CTCGCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGA 627819
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254
|| ||| ||| || | || |||| ||||| ||||| ||||| |||||
Sbjct 627820 GCGTTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCAT 627879
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314
||| |||||| | ||||| || | ||||| || ||||||| ||||| || ||
Sbjct 627880 GATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAGCC 627939
Query 125315 ---GCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
||| || | | | | |||| ||||| || ||||| | || | || || || |
Sbjct 627940 CTCGCAGCG----CTCGTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGA 627995
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
|||| | |||| || || |||||| | ||| | |||| || |||| | | | ||||
Sbjct 627996 AGGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTCGTCCTACGGCCAGCGCCTGG 628055
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || |||||||| |||||||||||||| ||| || || | ||||| |||
Sbjct 628056 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGG 628115
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
||||||||||||| | |||||||| ||||| | |||||| | || || || ||||
Sbjct 628116 TCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACG 628175
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGC 125609
|||| || ||| ||||| ||| || || || || || || | || |
Sbjct 628176 AGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCT----------CAAGCAC 628225
Query 125610 AGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAA 125666
| ||||| | | | |||||| | || | |||||||||||| || || ||
Sbjct 628226 CGCCCCAGCAAGG---ACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATCGAGCAG 628282
Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726
||||| | ||||| | || || | | || | ||||||||| || || |||
Sbjct 628283 GAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAG 628342
Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATT 125783
||||||| ||||| || || || || || ||| || | ||| || ||| |
Sbjct 628343 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTCG---CTCTCGGCAACGAGAAGGTG 628399
Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843
||||| |||| || |||||||| |||||| | ||| || || | || |||||||||
Sbjct 628400 TACAAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAAC 628459
Query 125844 TTTTTCGAGAAG 125855
|| |||||||||
Sbjct 628460 TTCTTCGAGAAG 628471
>seq60
Length=1285956
Score = 178 bits (196), Expect = 2e-39
Identities = 343/498 (69%), Gaps = 6/498 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || ||||| | ||| |||| | || || |||||||| ||
Sbjct 693857 CAGGGTGGCAACAAGCGCCCCGGCGCCTTTGCCATCTATCTCGAGCCGTGGCACGCCGAT 693798
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || || || ||||||| ||| ||| || |||| || ||||| ||
Sbjct 693797 GTGTTCGAGTTCATGGATCTGCGCAAGAACCATGGAAAGGAGGAGGTCCGCGCCAGAGAT 693738
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
||||| || || ||| | || ||| | ||||||||||| ||| | | | | |
Sbjct 693737 TTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGCCGAG 693678
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || || |||||||| |||| |||| ||||| |||||
Sbjct 693677 TGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGCGAGGAGTTC 693618
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | |||||| ||||| || || |||| | || | || |
Sbjct 693617 GAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCA-TCAAGGCTC- 693560
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| |||||| | |||||| | ||||||| ||||| || | || | ||| || |
Sbjct 693559 AGAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGT 693500
Query 97234 ACAAGGA-TACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292
||||||| || || || ||||| |||||||| || |||| ||||| |||||
Sbjct 693499 ACAAGGACCACTGT-AACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCC 693441
Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352
|| |||||||| || || | |||||| | |||| || ||| ||| || ||| |||
Sbjct 693440 AACCTGTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCTG 693381
Query 97353 GCATCGGTCAATCTGCCC 97370
|| || || |||||||
Sbjct 693380 GCCTCCCTCGCTCTGCCC 693363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057967989080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |