Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq94 109 1e-18 seq101 105 2e-17 seq79 98.7 2e-15 >seq94 Length=69539 Score = 109 bits (120), Expect = 1e-18 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || || || | || || || || || || ||||||||||| Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | |||||| || || || || || || || ||||| ||||| | || ||||| || Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | ||||| | ||| || ||||| || || |||||||| || ||||| || || || || Sbjct 45572 ATAGTATC-CGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAA 45630 Query 104551 TATCTGCAT 104559 |||||||| Sbjct 45631 AATCTGCAT 45639 >seq101 Length=737149 Score = 105 bits (116), Expect = 2e-17 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || ||||| | || || || || || || ||||| ||| Sbjct 590408 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAA 590349 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || |||||||||||||| | || || || Sbjct 590348 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTA 590289 Query 104489 TCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | |||||| | ||| ||| || || | ||||| ||||| || || || || || || Sbjct 590288 TCAATGGTATC-CGAGGATTCCACTTCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCAC 590230 Query 104548 AAATATCTGCAT 104559 || |||||||| Sbjct 590229 GAAGATCTGCAT 590218 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||||||||| ||||| || ||||| | ||||| Sbjct 589745 AGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCGTCC 589686 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | |||||| || || || || || || || ||| Sbjct 589685 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCC 589626 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || || || || | ||||| || || ||||| || || |||||| Sbjct 589625 TGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCGAGGGTGATAGTC 589566 Query 104528 TTACCAGT 104535 || || || Sbjct 589565 TTTCCGGT 589558 >seq79 Length=2610973 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || |||||||| ||||| | || || || || || || ||||||||||| Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | |||||| || || || || || || || ||||| ||||| | || || || || Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | ||| || || || ||||| || || |||||||| || || || || || || || Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396437945164