Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq68 116 6e-22 seq49 107 3e-19 >seq68 Length=963626 Score = 116 bits (128), Expect = 6e-22 Identities = 89/103 (86%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| |||| |||||| || ||||| || || ||||||||||| |||| Sbjct 191868 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 191926 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 |||||||||| ||||||||||| || ||||||||| |||| || Sbjct 191927 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGG 191969 >seq49 Length=537947 Score = 107 bits (118), Expect = 3e-19 Identities = 87/103 (84%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| ||| ||| || || ||||| || || ||||||||||| |||| Sbjct 504897 CGCCAAGCGTCATCGCAAGAT-TCTCCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 504839 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 |||| |||||||| |||||||| || ||||||||| |||| || Sbjct 504838 TCCGCCGTCTGGCCCGTCGTGGCGGTGTCAAGCGTATCTCCGG 504796 Score = 80.6 bits (88), Expect = 4e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || |||| ||| || || ||| ||||||||||| || || ||||| |||||||| | Sbjct 504673 GTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTC 504614 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| |||||||||| |||| || || ||||||| | || ||||| || ||||| Sbjct 504613 GATGTCGTCTATGCTCTGAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGTGGTTAA 504557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075078397169