Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq60 159 4e-34 seq58 96.9 4e-15 >seq60 Length=1285956 Score = 159 bits (176), Expect = 4e-34 Identities = 450/686 (66%), Gaps = 14/686 (2%) Strand=Plus/Plus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||||| | |||||| ||| | || || || ||||| ||||||||||| ||| Sbjct 693661 GGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATC 693720 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || ||||| | || | |||||||| | ||||| ||||| ||||| ||| Sbjct 693721 CACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGA 693780 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 || | |||| | | | ||| | |||||||| || | || ||||| | | || || Sbjct 693781 TCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGG 693840 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || ||||| || | || | |||||||| || | |||| | ||| || Sbjct 693841 CGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGG 693900 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--T 63480 || ||||| || || | |||||||| |||| ||||| ||| | ||||| ||| Sbjct 693901 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGG 693960 Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 | |||| ||||| || || || ||||| || ||||| | ||||| || | | Sbjct 693961 TGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 694018 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63600 |||||||||||||||| ||||| ||||| | || | || || || || || | | Sbjct 694019 TGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCT 694078 Query 63601 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63660 || | || || || || || | ||| || || || || || || | || | Sbjct 694079 GGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGG 694138 Query 63661 AAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTATATCCCATTGATGAATTCCTAC 63715 | | | ||||| |||||||| ||| || | | |||| |||| || || Sbjct 694139 ACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCC-CAGATG----CCAAC 694193 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 || |||||||| | ||||||||| || | || || |||||| || | || | || Sbjct 694194 AGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAG 694253 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835 ||| || |||| || || || ||||| || | ||| ||||| || ||||| | Sbjct 694254 GTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCGTAGAC 694313 Query 63836 AATAACCGAGTTGAGTTTATCCTTAT 63861 ||| |||||| || | ||||||| Sbjct 694314 AATGGCCGAGTCCAGCTCCTCCTTAT 694339 >seq58 Length=769140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 172/246 (70%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||||||||||||||| | || || |||||||| || || || Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| | ||| ||||| || | ||| || || || | ||| | || |||||| Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33480 || || || || || |||||||||| || | || || || || | | |||| || Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGG 628021 Query 33481 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | || ||||| ||||||||||| | || || || || || ||||| || Sbjct 628020 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 627962 Query 33540 AAAGAG 33545 ||||| Sbjct 627961 GAAGAG 627956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946164350280