Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq60 354 2e-92 >seq60 Length=1285956 Score = 354 bits (392), Expect = 2e-92 Identities = 1136/1737 (65%), Gaps = 38/1737 (2%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || ||||| ||||| ||| | |||||||||||| |||| ||| | | Sbjct 694232 ATTGTCGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATCTGGGGAGACAAC 694173 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCC 363558 || || || ||||| || || || ||| | || || || | ||||| || ||| Sbjct 694172 GTCGAGCGCGTCATTGAGACCTACAA-CTTG-ATGTCCAGCAAGT-TCTTCACCCATGCC 694116 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 | || || | | ||| ||||| || | | | ||| | || || ||||| || | Sbjct 694115 TCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTT 694056 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 | || ||||| || ||| |||||||||| |||||| || |||| || || | || Sbjct 694055 GATATAAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATC 693996 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTA 363737 ||||||| || ||||| |||||| | ||||| | | ||||| || | ||| Sbjct 693995 TCCAAGATGGCTGGCGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACTGGTTC-TTA 693937 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| ||| || || || ||||| | | ||||||||||| ||||| |||| Sbjct 693936 TATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGAGTGTTCAACAA 693877 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 || ||| | || || ||||||||||| |||||| || || ||||| || ||||| Sbjct 693876 CACCGCGCGCTATGTTGACCAGGGTGGCAACAAGCGCCCCGGCGCCTTTGCCATCTATCT 693817 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 |||||| || |||||| | || ||||| | || || || || ||| ||||| || Sbjct 693816 CGAGCCGTGGCACGCCGATGTGTTCGAGTTCATGGATCTGCGCAAGAACCATGGAAAGGA 693757 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||| | || || | ||| ||||| || || ||| | |||| | || |||||||| Sbjct 693756 GGAGGTCCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCG 693697 Query 363978 CGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 || ||| | | | | | ||| | || | ||||| |||| || || |||||| || Sbjct 693696 TGTCGAG--AAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCC 693639 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 || | || || || | | || || ||||| ||||| || | ||||| | | Sbjct 693638 GACTGCTACGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGT 693579 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || ||||| || || |||||||| |||| ||||||| | || | |||| ||||| Sbjct 693578 CGCAAGACCATCAAGGCTCAGAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACC 693519 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || | |||| ||| ||||||| || || ||||||||| ||||||| || |||| Sbjct 693518 GGCAACCCCTTCATGCTGTACAAGGACCACTGTAACCGCAAGAGCAACCAGAAGAACCTG 693459 Query 364216 GGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 ||||| |||| |||| |||||| || || ||||| ||||| ||| ||||||||| || Sbjct 693458 GGTACCATTC-GCAGCTCCAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCCGATGA 693400 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG-----TAAAAGATGGT 364329 | || || || ||||| || || |||| || || || | || || || | || Sbjct 693399 GGTGGCTGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTATGTTGACTACAACAAGGG 693340 Query 364330 ACT-TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT-TGCAATCTCGACA 364387 | | |||| || | || | || || ||| || || | | |||| || || Sbjct 693339 CGTGTATGACTTTGAGAAGCTGCACGAGGTCACC-ATGGTGGTTGTCCGCAACCTGAACC 693281 Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCG 364442 | || || || | || || | || || || || ||| || ||||| Sbjct 693280 GCATCATTGATGTCAACCACTACCCCGTGCCCGAGGCTCGCAACAGC-----AACATGCG 693226 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 || ||||| || ||| ||||||| ||||| || ||||| | ||| | || || Sbjct 693225 CCACCGCCCCATCGGTGTTGGTGTTCAGGGTCTGGCTGATGCTTTCCTCGCTCTGCGCAT 693166 Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 | | ||||| || | || ||||| | || || || ||||||| || || || || Sbjct 693165 GCCCTTTGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCA 693106 Query 364563 TGCCGCAATGACTG-CTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATG 364621 || || || | | || |||| || | || || |||||| ||||| || |||| Sbjct 693105 CGCTGCTCTGTCGGCCTCCGTG-GAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATG 693047 Query 364622 AGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 |||| || || | || ||||| | | |||||||| | |||||||||| ||| | | Sbjct 693046 AGGGCTCTCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCG 692987 Query 364682 TCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 || ||| ||||||||| || | | | | | ||| || ||| ||||||| Sbjct 692986 ACCTCTGGGACTGGGATAGCCTGAAGGAGC-AGATCAAGCTTCACGGTGTTCGCAACAGT 692928 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 || | || ||||||||||| || ||| | ||||| || || |||||||||||| Sbjct 692927 CTGCTGCTGGCTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGC 692868 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 || || |||| || ||| | || ||||| || ||| | ||||| || | ||| Sbjct 692867 TTTGAGCCGTACACCTCCAACATCTACCAGCGCCGTGTGCTTGCTGGAGAGTTCCAGGTG 692808 Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920 || || || | || ||||| ||||| || |||||| ||| |||||| Sbjct 692807 GTCAACCCGTGGTTGCTCCGCGATCTCGTCGACCTTGGCCTGTGGTCGGACTCGATGAAG 692748 Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT-CCAGGATTTCCAGAAGATCT 364979 ||| ||||| |||| || || || | ||||||||| |||| | | || | || | Sbjct 692747 AACCGCATCATTGCCGACAACGGCTCGATCCAGAACATTGCCAGCA-TCCCTGCTGACAT 692689 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039 ||| || | ||||| || || |||||||||||| ||| ||| | | | ||||| || Sbjct 692688 CAAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCGCACTGTTGTGCAGATGGCAGC 692629 Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAAC 365099 ||| || |||||||| || ||| ||||| | ||| | ||||| | || || Sbjct 692628 CGACCGTGGTGCTTTCATTGACCAGTCGCAGTCTCTGAACATCCACATGAAGGACCCCAC 692569 Query 365100 CTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| | || |||||| ||| ||| ||||| ||||| ||||| || Sbjct 692568 GATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACCGG 692512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351379004006