Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq58 147 2e-30
seq101 134 1e-26
seq94 104 2e-17
>seq58
Length=769140
Score = 147 bits (162), Expect = 2e-30
Identities = 353/521 (68%), Gaps = 21/521 (4%)
Strand=Plus/Plus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG-- 46141
|| || ||| | |||||||| |||||||||| || |||||| ||| | || |
Sbjct 627977 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTGGATC--CAGGA-CAAGGAG 628033
Query 46142 -CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGC 46200
|| | | || | |||| |||| |||||||| || |||||| |||| || ||
Sbjct 628034 TCGTCCTACGGCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT 628093
Query 46201 AGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGC 46260
|| | | ||||| | |||| | ||||| |||||||||||||| || |
Sbjct 628094 GCCTTCTCGTCGATCTTCTGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCC 628153
Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAA 46319
||||||||||| ||||| |||||||| ||||| || ||||| || || || || | |
Sbjct 628154 AACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCC 628213
Query 46320 CACTCGCGTGCAC--GACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCG 46377
||| | | |||| | ||| | ||| | | | ||| || ||| || ||
Sbjct 628214 CAC-CTCAAGCACCGCCCCAGCAAG-----GACGTCATCCAGAGAATCATCACCGATGCC 628267
Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC 46437
|||||||| ||| ||||||| | || | || |||||| ||||||||||||||||||
Sbjct 628268 GTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAAC 628327
Query 46438 G-CACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TC 46495
| ||| | ||| | ||||||||||| || || ||||| ||||| || ||| ||
Sbjct 628328 GCCACCCT-GATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGT--CGCTCTC 628384
Query 46496 ACCAGC-CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554
|| | |||| | | || ||| || ||||| || ||| | |||||||| |||
Sbjct 628385 GGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTG 628444
Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
| ||||| || || || ||||| ||||| || ||||| ||
Sbjct 628445 GGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTA 628485
>seq101
Length=737149
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| || || | ||| ||||| || || |||||||| || |
Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| || |||||| |||||||| ||||||||
Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| ||| ||||| | || | |||||| | ||||| |
Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || ||||| || || || ||||| ||||||||
Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || ||||| || || | ||| |||||||| || |||||||| || |
Sbjct 590216 CCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 590157
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| |||||||| || ||| |||| | ||||||||| ||||| |||
Sbjct 590156 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 590097
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| ||| ||| | | || | ||||| | |||||||
Sbjct 590096 ATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACC 590037
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || ||||||||||||||
Sbjct 590036 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | || || || | ||| | ||| |||||||| ||||| ||||| |||
Sbjct 589760 CCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 589701
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| ||||||||||| ||| |||| | ||||| |||||||| |||
Sbjct 589700 AGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 589641
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||||| | || | |||||| | ||||| |
Sbjct 589640 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACC 589581
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| ||| | || || |||||
Sbjct 589580 TCGAGGGTGATAGTCTTTCCGGT 589558
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||||| || || || | || | || |||||| || |||||||| |||
Sbjct 590445 GCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 590386
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| ||||| ||||||||||| ||| | || | |||||||||||||| ||
Sbjct 590385 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 590326
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || || || || ||| ||| | | || | ||||| | ||| || |
Sbjct 590325 GATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCAC 590266
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || || || || ||||| || ||||| ||||||||
Sbjct 590265 TTCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218
>seq94
Length=69539
Score = 104 bits (114), Expect = 2e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| ||||| ||||||||||| || | |
Sbjct 45450 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 45509
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | ||||| |||||||| ||||| || || ||||| ||| ||| ||||| | |
Sbjct 45510 TCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 45569
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | |||||| | |||||| | || | ||| | || || || || || || || ||||
Sbjct 45570 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 45629
Query 131225 AAATCTGCAT 131234
||||||||||
Sbjct 45630 AAATCTGCAT 45639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012015278720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |